myRT

myRT report for GCA_006874705.1_ASM687470v1

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Seq: CP035382.1 Leclercia adecarboxylata strain R25 chromosome, complete genome (4741546 bp)
Overview 1 RT 1: 467334-471804 bp 2 RT 2: 1900862-1905269 bp 3 RT 3: 4308875-4315569 bp 4 RT 4: 4371772-4375758 bp 5 RT 5: 4403815-4407827 bp Neighborhood of RT #1 [467334, 471804] RVT-Retrons HTH_29 Neighborhood of RT #2 [1900862, 1905271] TisB_tox RVT-GII IlvB_leader PRK08155 Neighborhood of RT #3 [4308875, 4315569] MurF DacC PGA_cap PRK10276 RVT-GII Neighborhood of RT #4 [4371772, 4375758] umuC PRK10276 RVT-GII Neighborhood of RT #5 [4403815, 4407827] DUF1367 RVT-GII HTH_XRE Feature: gene Location: 467334-468374 bp Feature: gene Location: 468569-469282 bp Feature: gene Location: 469269-470459 bp Ori: QDK17380.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 469416-469989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46941 6-469989 bp Feature: gene Location: 471001-471141 bp Ori: QDK21187.1 Feature: domain Description: HTH_29 Location: 471004-471106 bp Feature: domain Description: HTH_29 Location: 471 004-471 1 06 bp Feature: gene Location: 471583-471804 bp Feature: gene Location: 1900862-1900951 bp Ori: QDK18642.1 Gene: tisB Feature: domain Description: TisB_tox Location: 1900865-1900949 bp Feature: domain Description: TisB_tox Location: 1 900865-1 900949 bp Feature: gene Location: 1901288-1901539 bp Feature: gene Location: 1901539-1903023 bp Ori: QDK18644.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901941-1902631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 901 941 -1 902631 bp Feature: gene Location: 1903385-1903483 bp Ori: QDK18645.1 Gene: ivbL Feature: domain Description: IlvB_leader Location: 1903388-1903481 bp Feature: domain Description: IlvB_leader Location: 1 903388-1 903481 bp Feature: gene Location: 1903583-1905271 bp Ori: QDK18646.1 Gene: ilvB Feature: domain Description: PRK08155 Location: 1903586-1905269 bp Feature: domain Description: PRK081 55 Location: 1 903586-1 905269 bp Feature: gene Location: 4308875-4312189 bp Ori: QDK20770.1 Feature: domain Description: MurF Location: 4309034-4310282 bp Feature: domain Description: MurF Location: 4309034-431 0282 bp Feature: domain Description: DacC Location: 4310303-4310864 bp Feature: domain Description: DacC Location: 431 0303-431 0864 bp Feature: domain Description: PGA_cap Location: 4311095-4311851 bp Feature: domain Description: PGA_cap Location: 431 1 095-431 1 851 bp Feature: gene Location: 4312548-4312967 bp Ori: QDK21302.1 Gene: umuD Feature: domain Description: PRK10276 Location: 4312551-4312962 bp Feature: domain Description: PRK1 0276 Location: 431 2551 -431 2962 bp Feature: gene Location: 4313042-4314526 bp Ori: QDK20771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4313444-4314134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 3444-431 41 34 bp Feature: gene Location: 4314526-4314777 bp Feature: gene Location: 4315108-4315569 bp Feature: gene Location: 4371772-4373040 bp Ori: QDK20820.1 Gene: umuC Feature: domain Description: umuC Location: 4371775-4373038 bp Feature: domain Description: umuC Location: 4371 775-4373038 bp Feature: gene Location: 4373042-4373461 bp Ori: QDK20821.1 Gene: umuD Feature: domain Description: PRK10276 Location: 4373045-4373456 bp Feature: domain Description: PRK1 0276 Location: 4373045-4373456 bp Feature: gene Location: 4373542-4375026 bp Ori: QDK20822.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373944-4374634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373944-4374634 bp Feature: gene Location: 4375026-4375277 bp Feature: gene Location: 4375468-4375758 bp Feature: gene Location: 4403815-4404411 bp Ori: QDK20862.1 Feature: domain Description: DUF1367 Location: 4403818-4404403 bp Feature: domain Description: DUF1 367 Location: 440381 8-4404403 bp Feature: gene Location: 4405000-4405251 bp Feature: gene Location: 4405251-4406735 bp Ori: QDK20864.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4405653-4406343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4405653-4406343 bp Feature: gene Location: 4407184-4407405 bp Ori: QDK20865.1 Feature: domain Description: HTH_XRE Location: 4407214-4407361 bp Feature: domain Description: HTH_XRE Location: 440721 4-4407361 bp Feature: gene Location: 4407684-4407827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_29 (pfam13551), TisB_tox (TIGR04459), RVT-GII, IlvB_leader (pfam08049), PRK08155 (acetolactate synthase large subunit), MurF (COG0770), DacC (COG1686), PGA_cap (smart00854), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
umuC (PRK03609), DUF1367 (pfam07105), HTH_XRE (smart00530)

Seq: CP035381.1 Leclercia adecarboxylata strain R25 plasmid pLA-64, complete sequence (64226 bp)
Overview 1 RT 1: 44266-48020 bp Neighborhood of RT #1 [44266, 48025] PRK10276 RVT-GII ArdC Feature: gene Location: 44266-44697 bp Ori: QDK16930.1 Gene: umuD Feature: domain Description: PRK10276 Location: 44317-44680 bp Feature: domain Description: PRK102 76 Location: 44317-44680 bp Feature: gene Location: 44855-45106 bp Feature: gene Location: 45106-46590 bp Ori: QDK16932.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45508-46198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45508-46198 bp Feature: gene Location: 46583-46852 bp Feature: gene Location: 47060-48025 bp Ori: QDK16934.1 Feature: domain Description: ArdC Location: 47186-48020 bp Feature: domain Description: ArdC Location: 47186-4802 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)