myRT

myRT report for GCA_006965465.1_ASM696546v1

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Seq: CP041359.1 Escherichia coli strain U1 chromosome, complete genome (5320024 bp)
Overview 1 RT 1: 1277192-1281536 bp 2 RT 2: 1936164-1940455 bp 3 RT 3: 2596922-2602816 bp Neighborhood of RT #1 [1277192, 1281547] InsE RVT-GII GIIM PHA02517 TetR_N TetR_C_28 Neighborhood of RT #2 [1936164, 1940455] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2596922, 2602953] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 1277192-1277931 bp Feature: domain Description: InsE Location: 1277195-1277519 bp Feature: domain Description: InsE Location: 1 2771 95-1 27751 9 bp Feature: gene Location: 1277924-1278295 bp Feature: gene Location: 1278603-1280111 bp Ori: QDK76890.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278861-1279593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 278861 -1 279593 bp Feature: domain Description: GIIM Note: maturase Location: 1279668-1279866 bp Feature: domain Description: GIIM Note: maturase Location: 1 279668-1 279866 bp Feature: gene Location: 1280201-1280678 bp Feature: domain Description: PHA02517 Location: 1280207-1280504 bp Feature: domain Description: PHA0251 7 Location: 1 280207-1 280504 bp Feature: gene Location: 1280969-1281547 bp Ori: QDK73288.1 Feature: domain Description: TetR_N Location: 1281038-1281173 bp Feature: domain Description: TetR_N Location: 1 281 038-1 281 1 73 bp Feature: domain Description: TetR_C_28 Location: 1281251-1281536 bp Feature: domain Description: TetR_C_28 Location: 1 281 251 -1 281 536 bp Feature: gene Location: 1936164-1937393 bp Ori: QDK73835.1 Feature: domain Description: YesM Location: 1936644-1937385 bp Feature: domain Description: YesM Location: 1 936644-1 937385 bp Feature: gene Location: 1937466-1937654 bp Feature: gene Location: 1937976-1938497 bp Ori: QDK73837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937982-1938264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 937982-1 938264 bp Feature: domain Description: GIIM Note: maturase Location: 1938312-1938492 bp Feature: domain Description: GIIM Note: maturase Location: 1 93831 2-1 938492 bp Feature: gene Location: 1938673-1939064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939003-1939063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939003-1 939063 bp Feature: gene Location: 1939289-1939576 bp Feature: gene Location: 1939550-1940455 bp Feature: gene Location: 2596922-2597392 bp Feature: gene Location: 2597438-2597578 bp Ori: QDK74413.1 Feature: domain Description: Phage_ASH Location: 2597465-2597558 bp Feature: domain Description: Phage_ASH Location: 2597465-2597558 bp Feature: gene Location: 2597739-2600948 bp Ori: QDK74414.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2598267-2598756 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2598267-2598756 bp Feature: domain Description: nitrilase Location: 2600262-2600859 bp Feature: domain Description: nitrilase Location: 2600262-2600859 bp Feature: gene Location: 2601243-2602046 bp Ori: QDK74415.1 Feature: domain Description: AbiEi_3_N Location: 2601276-2601537 bp Feature: domain Description: AbiEi_3_N Location: 2601 276-2601 537 bp Feature: domain Description: AbiEi_3 Location: 2601549-2602005 bp Feature: domain Description: AbiEi_3 Location: 2601 549-2602005 bp Feature: gene Location: 2602033-2602953 bp Ori: QDK74416.1 Feature: domain Description: AbiEii Location: 2602075-2602816 bp Feature: domain Description: AbiEii Location: 2602075-260281 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), TetR_N (pfam00440), TetR_C_28 (pfam17937), YesM (COG2972), Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424)
AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: CP041358.1 Escherichia coli strain U1 plasmid unnamed1, complete sequence (130003 bp)
Overview 1 RT 1: 2409-6712 bp 2 RT 2: 20267-23819 bp 3 RT 3: 109411-113069 bp Neighborhood of RT #1 [2409, 7112] InsE InsE rve_2 RVT-GII GIIM InsE Neighborhood of RT #2 [20267, 23895] PHA02517 RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #3 [109411, 113466] autotrans_barl PHA02517 RVT-GII GIIM InsE Feature: gene Location: 2409-2813 bp Ori: QDK72008.1 Feature: domain Description: InsE Location: 2439-2775 bp Feature: domain Description: InsE Location: 2 439-2 775 bp Feature: gene Location: 2929-3963 bp Feature: domain Description: InsE Location: 2956-3223 bp Feature: domain Description: InsE Location: 2 956-32 2 3 bp Feature: domain Description: rve_2 Location: 3832-3958 bp Feature: domain Description: rve_2 Location: 3832 -3958 bp Feature: gene Location: 4192-5700 bp Ori: QDK72138.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4450-5182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4450-5182 bp Feature: domain Description: GIIM Note: maturase Location: 5260-5455 bp Feature: domain Description: GIIM Note: maturase Location: 52 60-5455 bp Feature: gene Location: 6009-6380 bp Feature: gene Location: 6373-7112 bp Feature: domain Description: InsE Location: 6376-6712 bp Feature: domain Description: InsE Location: 6376-6712 bp Feature: gene Location: 20267-20623 bp Feature: domain Description: PHA02517 Location: 20276-20624 bp Feature: domain Description: PHA02 517 Location: 2 02 76-2 062 4 bp Feature: gene Location: 20616-20987 bp Feature: gene Location: 21295-22803 bp Ori: QDK72140.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21553-22285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1553-2 2 2 85 bp Feature: domain Description: GIIM Note: maturase Location: 22363-22558 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 363-2 2 558 bp Feature: gene Location: 22893-23366 bp Feature: domain Description: PHA02517 Location: 22899-23364 bp Feature: domain Description: PHA02 517 Location: 2 2 899-2 3364 bp Feature: gene Location: 23411-23895 bp Feature: domain Description: PRK09413 Location: 23459-23819 bp Feature: domain Description: PRK09413 Location: 2 3459-2 3819 bp Feature: gene Location: 109411-109980 bp Ori: QDK72120.1 Feature: domain Description: autotrans_barl Location: 109492-109927 bp Feature: domain Description: autotrans_barl Location: 109492 -10992 7 bp Feature: gene Location: 109983-110456 bp Feature: domain Description: PHA02517 Location: 109989-110454 bp Feature: domain Description: PHA02 517 Location: 109989-110454 bp Feature: gene Location: 110546-112054 bp Ori: QDK72151.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110804-111536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110804-111536 bp Feature: domain Description: GIIM Note: maturase Location: 111611-111809 bp Feature: domain Description: GIIM Note: maturase Location: 111611-111809 bp Feature: gene Location: 112363-112734 bp Feature: gene Location: 112727-113466 bp Feature: domain Description: InsE Location: 112730-113069 bp Feature: domain Description: InsE Location: 112 730-113069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), autotrans_barl (TIGR01414)