myRT

myRT report for GCA_006971785.1_ASM697178v1

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Seq: CP041354.1 Pseudomonas aeruginosa strain AZPAE15042 chromosome, complete genome (6527298 bp)
Overview 1 RT 1: 597323-614044 bp 2 RT 2: 630299-638472 bp 3 RT 3: 1043296-1050106 bp 4 RT 4: 2356216-2362093 bp Neighborhood of RT #1 [597323, 614046] DotA_TraY RVT-Retrons PHA02517 InsE RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [630299, 638486] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1043296, 1050303] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [2356216, 2362093] conj_PilL HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 597323-599575 bp Ori: QDL00907.1 Feature: domain Description: DotA_TraY Location: 597437-599369 bp Feature: domain Description: DotA_TraY Location: 597437-599369 bp Feature: gene Location: 600674-600919 bp Feature: gene Location: 601457-603193 bp Ori: QDL00909.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 601631-602228 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 601 631 -602228 bp Feature: gene Location: 604009-604863 bp Ori: QDL00910.1 Feature: domain Description: PHA02517 Location: 604075-604855 bp Feature: domain Description: PHA0251 7 Location: 604075-604855 bp Feature: gene Location: 604860-605144 bp Ori: QDL00911.1 Feature: domain Description: InsE Location: 604872-605136 bp Feature: domain Description: InsE Location: 604872-6051 36 bp Feature: gene Location: 605583-607268 bp Ori: QDL00912.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 605640-605880 bp Feature: domain Description: RVT_N Location: 605640-605880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605928-606564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605928-606564 bp Feature: domain Description: GIIM Note: maturase Location: 606618-606849 bp Feature: domain Description: GIIM Note: maturase Location: 60661 8-606849 bp Feature: domain Description: HNH Note: nucleases Location: 607101-607239 bp Feature: domain Description: HNH Note: nucleases Location: 6071 01 -607239 bp Feature: gene Location: 608349-612086 bp Ori: QDL00913.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 608457-609114 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 608457-6091 1 4 bp Feature: domain Description: PRK09776 Location: 609327-609798 bp Feature: domain Description: PRK09776 Location: 609327-609798 bp Feature: domain Description: PAS Location: 609843-610386 bp Feature: domain Description: PAS Location: 609843-61 0386 bp Feature: domain Description: PRK10060 Location: 610389-612036 bp Feature: domain Description: PRK1 0060 Location: 61 0389-61 2036 bp Feature: gene Location: 612193-614046 bp Ori: QDL00914.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 612205-614044 bp Feature: domain Description: PRK05658 Location: 61 2205-61 4044 bp Feature: gene Location: 630299-631591 bp Ori: QDL00932.1 Gene: surA Feature: domain Description: PRK10770 Location: 630389-631583 bp Feature: domain Description: PRK1 0770 Location: 630389-631 583 bp Feature: gene Location: 631572-634352 bp Ori: QDL00933.1 Gene: lptD Feature: domain Description: LptD Location: 631917-634338 bp Feature: domain Description: LptD Location: 631 91 7-634338 bp Feature: gene Location: 634485-635795 bp Ori: QDL00934.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634488-635064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634488-635064 bp Feature: domain Description: YkfC Location: 635271-635424 bp Feature: domain Description: YkfC Location: 635271 -635424 bp Feature: domain Description: HNH Note: nucleases Location: 635601-635739 bp Feature: domain Description: HNH Note: nucleases Location: 635601 -635739 bp Feature: gene Location: 637039-637173 bp Feature: gene Location: 637470-638486 bp Ori: QDL00936.1 Feature: domain Description: COG3178 Location: 637473-638472 bp Feature: domain Description: COG31 78 Location: 637473-638472 bp Feature: gene Location: 1043296-1044123 bp Ori: QDL01313.1 Gene: glnQ_1 Feature: domain Description: ABC_phnC Location: 1043326-1044040 bp Feature: domain Description: ABC_phnC Location: 1 043326-1 044040 bp Feature: gene Location: 1044466-1045107 bp Ori: QDL01314.1 Feature: domain Description: DUF772 Location: 1044616-1044811 bp Feature: domain Description: DUF772 Location: 1 04461 6-1 04481 1 bp Feature: gene Location: 1045496-1046764 bp Ori: QDL01315.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045709-1046366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 045709-1 046366 bp Feature: domain Description: GIIM Note: maturase Location: 1046444-1046666 bp Feature: domain Description: GIIM Note: maturase Location: 1 046444-1 046666 bp Feature: gene Location: 1047496-1047675 bp Feature: gene Location: 1048759-1050303 bp Ori: QDL01317.1 Feature: domain Description: CHD Location: 1048975-1049389 bp Feature: domain Description: CHD Location: 1 048975-1 049389 bp Feature: domain Description: CHD Location: 1049617-1050106 bp Feature: domain Description: CHD Location: 1 04961 7-1 0501 06 bp Feature: gene Location: 2356216-2356815 bp Ori: QDL02506.1 Feature: domain Description: conj_PilL Location: 2356399-2356708 bp Feature: domain Description: conj_PilL Location: 2356399-2356708 bp Feature: gene Location: 2356954-2358213 bp Ori: QDL02507.1 Feature: domain Description: HepA Location: 2356966-2357107 bp Feature: domain Description: HepA Location: 2356966-23571 07 bp Feature: domain Description: SF2_C_SNF Location: 2357653-2358049 bp Feature: domain Description: SF2_C_SNF Location: 2357653-2358049 bp Feature: gene Location: 2358281-2359999 bp Ori: QDL02508.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 2358338-2358575 bp Feature: domain Description: RVT_N Location: 2358338-2358575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2358626-2359277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2358626-2359277 bp Feature: domain Description: GIIM Note: maturase Location: 2359331-2359562 bp Feature: domain Description: GIIM Note: maturase Location: 2359331 -2359562 bp Feature: domain Description: HNHc Note: nucleases Location: 2359796-2359952 bp Feature: domain Description: HNHc Note: nucleases Location: 2359796-2359952 bp Feature: gene Location: 2360596-2361651 bp Ori: QDL02509.1 Feature: domain Description: DEXHc_Snf Location: 2360815-2361070 bp Feature: domain Description: DEXHc_Snf Location: 236081 5-2361 070 bp Feature: gene Location: 2361788-2362093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DotA_TraY (TIGR04346), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302)
conj_PilL (TIGR03748), HepA (COG0553), SF2_C_SNF (cd18793), HNHc (smart00507), DEXHc_Snf (cd17919)