myRT

myRT report for GCA_006974145.1_ASM697414v1

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Seq: CP039456.1 Changchengzhania lutea strain SM1355 chromosome, complete genome (4130958 bp)
Overview 1 RT 1: 249123-257803 bp 2 RT 2: 415781-420485 bp 3 RT 3: 669720-677836 bp 4 RT 4: 2485648-2491549 bp 5 RT 5: 2529525-2543498 bp 6 RT 6: 3113977-3126610 bp 7 RT 7: 3394535-3407731 bp 8 RT 8: 3603785-3611363 bp Neighborhood of RT #1 [249123, 257803] xerC Cyt_C5_DNA_methylase RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #2 [415781, 420742] Gp49 HTH_XRE RVT-GII GIIM SrmB DbpA Neighborhood of RT #3 [669720, 677836] TolBN TPR TPR LytTR COG5470 RVT-GII GIIM Trypsin_2 RVT-GII GIIM Neighborhood of RT #4 [2485648, 2491557] DUF4131 Competence RVT-GII GIIM spr LpxB Neighborhood of RT #5 [2529525, 2543512] RVT-GII GIIM RVT-GII GIIM ParE_toxin COG3547 RVT-GII GIIM SpoVT_AbrB PemK_toxin RVT-GII GIIM HTH_ARAC Neighborhood of RT #6 [3113977, 3126996] RVT-GII GIIM RVT-GII GIIM MORN_2 MORN_2 RVT-GII GIIM DEDD_Tnp_IS110 COG3547 RVT-GII GIIM MmcQ LysR Neighborhood of RT #7 [3394535, 3407739] RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM SRA Neighborhood of RT #8 [3603785, 3611413] RVT_N RVT-GII GIIM Peptidases_S8_Subtilisin_like_2 KOG0730 Feature: gene Location: 249123-249929 bp Feature: domain Description: xerC Location: 249162-249915 bp Feature: domain Description: xerC Location: 2491 62-24991 5 bp Feature: gene Location: 249980-251059 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 250046-250982 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 250046-250982 bp Feature: gene Location: 251180-252460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251375-251990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 375-251 990 bp Feature: domain Description: GIIM Note: maturase Location: 252062-252275 bp Feature: domain Description: GIIM Note: maturase Location: 252062-252275 bp Feature: gene Location: 252465-252689 bp Feature: gene Location: 253016-253315 bp Feature: gene Location: 253349-254629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253544-254159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253544-2541 59 bp Feature: domain Description: GIIM Note: maturase Location: 254231-254444 bp Feature: domain Description: GIIM Note: maturase Location: 254231 -254444 bp Feature: gene Location: 254634-254858 bp Feature: gene Location: 255084-255248 bp Feature: gene Location: 255325-255549 bp Feature: gene Location: 255647-256927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255842-256457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255842-256457 bp Feature: domain Description: GIIM Note: maturase Location: 256529-256742 bp Feature: domain Description: GIIM Note: maturase Location: 256529-256742 bp Feature: gene Location: 256932-257156 bp Feature: gene Location: 257585-257803 bp Feature: gene Location: 415781-416113 bp Feature: domain Description: Gp49 Location: 415826-416087 bp Feature: domain Description: Gp49 Location: 41 5826-41 6087 bp Feature: gene Location: 416124-416456 bp Feature: domain Description: HTH_XRE Location: 416250-416409 bp Feature: domain Description: HTH_XRE Location: 41 6250-41 6409 bp Feature: gene Location: 416550-417830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416745-417360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6745-41 7360 bp Feature: domain Description: GIIM Note: maturase Location: 417432-417645 bp Feature: domain Description: GIIM Note: maturase Location: 41 7432-41 7645 bp Feature: gene Location: 417835-418059 bp Feature: gene Location: 418880-420742 bp Feature: domain Description: SrmB Location: 418886-420191 bp Feature: domain Description: SrmB Location: 41 8886-4201 91 bp Feature: domain Description: DbpA Location: 420275-420485 bp Feature: domain Description: DbpA Location: 420275-420485 bp Feature: gene Location: 669720-671531 bp Feature: domain Description: TolBN Location: 669801-670158 bp Feature: domain Description: TolBN Location: 669801 -6701 58 bp Feature: domain Description: TPR Location: 670212-670473 bp Feature: domain Description: TPR Location: 67021 2-670473 bp Feature: domain Description: TPR Location: 670548-670824 bp Feature: domain Description: TPR Location: 670548-670824 bp Feature: domain Description: LytTR Location: 671217-671505 bp Feature: domain Description: LytTR Location: 671 21 7-671 505 bp Feature: gene Location: 671644-672405 bp Feature: domain Description: COG5470 Location: 671797-672073 bp Feature: domain Description: COG5470 Location: 671 797-672073 bp Feature: gene Location: 672506-673786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672701-673316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672701 -67331 6 bp Feature: domain Description: GIIM Note: maturase Location: 673388-673601 bp Feature: domain Description: GIIM Note: maturase Location: 673388-673601 bp Feature: gene Location: 673791-674015 bp Feature: gene Location: 674429-675253 bp Feature: domain Description: Trypsin_2 Location: 674513-675020 bp Feature: domain Description: Trypsin_2 Location: 67451 3-675020 bp Feature: gene Location: 675347-676627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675542-676157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675542-6761 57 bp Feature: domain Description: GIIM Note: maturase Location: 676229-676442 bp Feature: domain Description: GIIM Note: maturase Location: 676229-676442 bp Feature: gene Location: 676632-676856 bp Feature: gene Location: 677150-677836 bp Feature: gene Location: 2485648-2487687 bp Feature: domain Description: DUF4131 Location: 2485762-2486221 bp Feature: domain Description: DUF41 31 Location: 2485762-2486221 bp Feature: domain Description: Competence Location: 2486353-2487136 bp Feature: domain Description: Competence Location: 2486353-24871 36 bp Feature: gene Location: 2488240-2488464 bp Feature: gene Location: 2488520-2489749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2488664-2489279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2488664-2489279 bp Feature: domain Description: GIIM Note: maturase Location: 2489351-2489564 bp Feature: domain Description: GIIM Note: maturase Location: 2489351 -2489564 bp Feature: gene Location: 2489883-2490464 bp Feature: domain Description: spr Location: 2489931-2490462 bp Feature: domain Description: spr Location: 2489931 -2490462 bp Feature: gene Location: 2490445-2491557 bp Feature: domain Description: LpxB Location: 2490448-2491549 bp Feature: domain Description: LpxB Location: 2490448-2491 549 bp Feature: gene Location: 2529525-2530397 bp Feature: gene Location: 2530459-2530680 bp Feature: gene Location: 2531249-2532502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531462-2532119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531 462-25321 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 2532203-2532425 bp Feature: domain Description: GIIM Note: maturase Location: 2532203-2532425 bp Feature: gene Location: 2533115-2534377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2533310-2533925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253331 0-2533925 bp Feature: domain Description: GIIM Note: maturase Location: 2533997-2534210 bp Feature: domain Description: GIIM Note: maturase Location: 2533997-253421 0 bp Feature: gene Location: 2535131-2535367 bp Feature: gene Location: 2535361-2535687 bp Feature: domain Description: ParE_toxin Location: 2535379-2535649 bp Feature: domain Description: ParE_toxin Location: 2535379-2535649 bp Feature: gene Location: 2536027-2537082 bp Feature: domain Description: COG3547 Location: 2536210-2537023 bp Feature: domain Description: COG3547 Location: 253621 0-2537023 bp Feature: gene Location: 2537269-2537631 bp Feature: gene Location: 2537844-2539124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2538039-2538654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2538039-2538654 bp Feature: domain Description: GIIM Note: maturase Location: 2538726-2538939 bp Feature: domain Description: GIIM Note: maturase Location: 2538726-2538939 bp Feature: gene Location: 2539129-2539353 bp Feature: gene Location: 2539813-2540058 bp Feature: domain Description: SpoVT_AbrB Location: 2539834-2539954 bp Feature: domain Description: SpoVT_AbrB Location: 2539834-2539954 bp Feature: gene Location: 2540049-2540372 bp Feature: domain Description: PemK_toxin Location: 2540064-2540361 bp Feature: domain Description: PemK_toxin Location: 2540064-2540361 bp Feature: gene Location: 2540493-2541773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2540688-2541303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2540688-2541 303 bp Feature: domain Description: GIIM Note: maturase Location: 2541375-2541588 bp Feature: domain Description: GIIM Note: maturase Location: 2541 375-2541 588 bp Feature: gene Location: 2541778-2542002 bp Feature: gene Location: 2542484-2543512 bp Feature: domain Description: HTH_ARAC Location: 2543249-2543498 bp Feature: domain Description: HTH_ARAC Location: 2543249-2543498 bp Feature: gene Location: 3113977-3114537 bp Feature: gene Location: 3114965-3115189 bp Feature: gene Location: 3115194-3116474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3115389-3116004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 5389-31 1 6004 bp Feature: domain Description: GIIM Note: maturase Location: 3116076-3116289 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 6076-31 1 6289 bp Feature: gene Location: 3117076-3118329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117289-3117946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7289-31 1 7946 bp Feature: domain Description: GIIM Note: maturase Location: 3118030-3118252 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 8030-31 1 8252 bp Feature: gene Location: 3118435-3118968 bp Feature: domain Description: MORN_2 Location: 3118615-3118669 bp Feature: domain Description: MORN_2 Location: 31 1 861 5-31 1 8669 bp Feature: domain Description: MORN_2 Location: 3118735-3118786 bp Feature: domain Description: MORN_2 Location: 31 1 8735-31 1 8786 bp Feature: gene Location: 3119440-3119664 bp Feature: gene Location: 3119669-3120949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119864-3120479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 9864-31 20479 bp Feature: domain Description: GIIM Note: maturase Location: 3120551-3120764 bp Feature: domain Description: GIIM Note: maturase Location: 31 20551 -31 20764 bp Feature: gene Location: 3121450-3122796 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3121498-3121915 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 31 21 498-31 21 91 5 bp Feature: domain Description: COG3547 Location: 3122407-3122665 bp Feature: domain Description: COG3547 Location: 31 22407-31 22665 bp Feature: gene Location: 3123206-3123979 bp Feature: gene Location: 3124149-3124373 bp Feature: gene Location: 3124378-3125658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3124573-3125188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 24573-31 251 88 bp Feature: domain Description: GIIM Note: maturase Location: 3125260-3125473 bp Feature: domain Description: GIIM Note: maturase Location: 31 25260-31 25473 bp Feature: gene Location: 3125750-3126001 bp Feature: domain Description: MmcQ Location: 3125789-3125993 bp Feature: domain Description: MmcQ Location: 31 25789-31 25993 bp Feature: gene Location: 3126106-3126996 bp Feature: domain Description: LysR Location: 3126112-3126610 bp Feature: domain Description: LysR Location: 31 261 1 2-31 2661 0 bp Feature: gene Location: 3394535-3396628 bp Feature: gene Location: 3396861-3397061 bp Feature: gene Location: 3397296-3398558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397491-3398106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3397491 -33981 06 bp Feature: domain Description: GIIM Note: maturase Location: 3398178-3398391 bp Feature: domain Description: GIIM Note: maturase Location: 33981 78-3398391 bp Feature: gene Location: 3399171-3400424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399384-3400041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399384-3400041 bp Feature: domain Description: GIIM Note: maturase Location: 3400125-3400347 bp Feature: domain Description: GIIM Note: maturase Location: 34001 25-3400347 bp Feature: gene Location: 3400529-3400831 bp Feature: gene Location: 3400842-3401039 bp Feature: gene Location: 3401638-3403761 bp Feature: gene Location: 3404115-3404339 bp Feature: gene Location: 3404344-3405624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404539-3405154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3404539-34051 54 bp Feature: domain Description: GIIM Note: maturase Location: 3405226-3405439 bp Feature: domain Description: GIIM Note: maturase Location: 3405226-3405439 bp Feature: gene Location: 3405719-3406720 bp Feature: gene Location: 3406891-3407739 bp Feature: domain Description: SRA Location: 3407320-3407731 bp Feature: domain Description: SRA Location: 3407320-3407731 bp Feature: gene Location: 3603785-3604345 bp Feature: gene Location: 3605145-3605372 bp Feature: gene Location: 3605691-3607196 bp Feature: domain Description: RVT_N Location: 3605742-3605985 bp Feature: domain Description: RVT_N Location: 3605742-3605985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606030-3606684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606030-3606684 bp Feature: domain Description: GIIM Note: maturase Location: 3606744-3606975 bp Feature: domain Description: GIIM Note: maturase Location: 3606744-3606975 bp Feature: gene Location: 3607838-3610363 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 3608774-3609695 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 3608774-3609695 bp Feature: gene Location: 3610373-3611413 bp Feature: domain Description: KOG0730 Location: 3610766-3611363 bp Feature: domain Description: KOG0730 Location: 361 0766-361 1 363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerC (PRK01287), Cyt_C5_DNA_methylase (cl30459), RVT-GII, GIIM (pfam08388), Gp49 (pfam05973), HTH_XRE (smart00530), SrmB (COG0513), DbpA (pfam03880), TolBN (COG5616), TPR (smart00028)
LytTR (smart00850), COG5470 (Uncharacterized conserved protein, DUF1330 family ), Trypsin_2 (pfam13365), DUF4131 (pfam13567), Competence (pfam03772), spr (PRK10838), LpxB (pfam02684), ParE_toxin (pfam05016), COG3547 (Transposase ), SpoVT_AbrB (smart00966)
PemK_toxin (pfam02452), HTH_ARAC (smart00342), MORN_2 (pfam07661), DEDD_Tnp_IS110 (pfam01548), MmcQ (COG2315), LysR (COG0583), SRA (smart00466), RVT_N (pfam13655), Peptidases_S8_Subtilisin_like_2 (cd04847), KOG0730 (KOG0730, AAA+-type ATPase )