myRT

myRT report for GCA_007012305.1_ASM701230v1

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Seq: CP041393.1 Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 plasmid p45407_1, complete sequence (139547 bp)
Overview 1 RT 1: 119928-128926 bp Neighborhood of RT #1 [119928, 128926] RVT_N RVT-GII GIIM HNHc AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 119928-120119 bp Feature: gene Location: 120089-120274 bp Feature: gene Location: 120432-122099 bp Ori: QDM07039.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120480-120717 bp Feature: domain Description: RVT_N Location: 1 20480-1 2071 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120768-121410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20768-1 21 41 0 bp Feature: domain Description: GIIM Note: maturase Location: 121461-121695 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 461 -1 21 695 bp Feature: domain Description: HNHc Note: nucleases Location: 121905-122064 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 905-1 22064 bp Feature: gene Location: 122979-123236 bp Feature: gene Location: 123499-123729 bp Feature: gene Location: 125190-125753 bp Ori: QDM07043.1 Feature: domain Description: AdoMet_MTases Location: 125352-125655 bp Feature: domain Description: AdoMet_MTases Location: 1 25352-1 25655 bp Feature: gene Location: 125734-126144 bp Feature: gene Location: 126122-127789 bp Ori: QDM07044.1 Gene: ltrA Feature: domain Description: RVT_N Location: 126170-126407 bp Feature: domain Description: RVT_N Location: 1 261 70-1 26407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126458-127100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26458-1 271 00 bp Feature: domain Description: GIIM Note: maturase Location: 127151-127385 bp Feature: domain Description: GIIM Note: maturase Location: 1 271 51 -1 27385 bp Feature: domain Description: HNHc Note: nucleases Location: 127595-127754 bp Feature: domain Description: HNHc Note: nucleases Location: 1 27595-1 27754 bp Feature: gene Location: 128570-128763 bp Feature: gene Location: 128698-128926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: CP041394.1 Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 plasmid p45407_2 (137828 bp)
Overview 1 RT 1: 111425-115083 bp 2 RT 2: 135818-137828 bp Neighborhood of RT #1 [111425, 115085] RVT_N RVT-GII GIIM HNHc PRK13732 Neighborhood of RT #2 [135818, 137828] RVT_N RVT-GII Feature: gene Location: 111425-111523 bp Feature: gene Location: 111561-111746 bp Feature: gene Location: 111724-113391 bp Ori: QDM07178.1 Gene: ltrA Feature: domain Description: RVT_N Location: 111772-112009 bp Feature: domain Description: RVT_N Location: 111772 -112 009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112060-112702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 060-112 702 bp Feature: domain Description: GIIM Note: maturase Location: 112753-112987 bp Feature: domain Description: GIIM Note: maturase Location: 112 753-112 987 bp Feature: domain Description: HNHc Note: nucleases Location: 113197-113356 bp Feature: domain Description: HNHc Note: nucleases Location: 113197-113356 bp Feature: gene Location: 114105-114611 bp Feature: gene Location: 114558-115085 bp Ori: QDM07179.1 Feature: domain Description: PRK13732 Location: 114561-115083 bp Feature: domain Description: PRK13732 Location: 114561-115083 bp Feature: gene Location: 135818-136024 bp Feature: gene Location: 136023-136544 bp Feature: gene Location: 136994-137828 bp Ori: QDM07212.1 Feature: domain Description: RVT_N Location: 137042-137279 bp Feature: domain Description: RVT_N Location: 137042 -1372 79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137330-137828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137330-13782 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP041392.1 Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome (4857938 bp)
Overview 1 RT 1: 515775-519535 bp 2 RT 2: 822750-827041 bp 3 RT 3: 2781462-2786897 bp 4 RT 4: 4178879-4182256 bp 5 RT 5: 4193825-4201620 bp Neighborhood of RT #1 [515775, 519537] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822750, 827041] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2781462, 2786897] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4178879, 4182685] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [4193825, 4201727] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 515775-516514 bp Feature: domain Description: InsE Location: 515778-516117 bp Feature: domain Description: InsE Location: 515778-516117 bp Feature: gene Location: 516507-516878 bp Feature: gene Location: 517187-518695 bp Ori: QDM06741.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517445-518177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517445-518177 bp Feature: domain Description: GIIM Note: maturase Location: 518252-518450 bp Feature: domain Description: GIIM Note: maturase Location: 518252-518450 bp Feature: gene Location: 518785-519258 bp Feature: domain Description: PHA02517 Location: 518791-519256 bp Feature: domain Description: PHA02517 Location: 518791-519256 bp Feature: gene Location: 519301-519537 bp Feature: domain Description: DUF1016_N Location: 519358-519535 bp Feature: domain Description: DUF1016_N Location: 5193 58-51953 5 bp Feature: gene Location: 822750-823979 bp Ori: QDM03261.1 Feature: domain Description: YesM Location: 823230-823971 bp Feature: domain Description: YesM Location: 823 23 0-823 971 bp Feature: gene Location: 824052-824240 bp Feature: gene Location: 824562-825083 bp Ori: QDM03263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824568-824850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824568-824850 bp Feature: domain Description: GIIM Note: maturase Location: 824898-825078 bp Feature: domain Description: GIIM Note: maturase Location: 824898-825078 bp Feature: gene Location: 825259-825650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825589-825649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825589-825649 bp Feature: gene Location: 825875-826162 bp Feature: gene Location: 826136-827041 bp Feature: gene Location: 2781462-2782201 bp Feature: domain Description: InsE Location: 2781465-2781804 bp Feature: domain Description: InsE Location: 2781465-2781804 bp Feature: gene Location: 2782194-2782565 bp Feature: gene Location: 2782874-2784382 bp Ori: QDM06832.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783132-2783864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2783 13 2-2783 864 bp Feature: domain Description: GIIM Note: maturase Location: 2783939-2784137 bp Feature: domain Description: GIIM Note: maturase Location: 2783 93 9-278413 7 bp Feature: gene Location: 2784472-2784945 bp Feature: domain Description: PHA02517 Location: 2784478-2784943 bp Feature: domain Description: PHA02517 Location: 2784478-2784943 bp Feature: gene Location: 2784987-2786897 bp Feature: gene Location: 4178879-4179136 bp Feature: gene Location: 4179219-4179706 bp Feature: domain Description: PHA02517 Location: 4179222-4179393 bp Feature: domain Description: PHA02517 Location: 4179222-41793 93 bp Feature: gene Location: 4179787-4181295 bp Ori: QDM06889.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180045-4180777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180045-4180777 bp Feature: domain Description: GIIM Note: maturase Location: 4180852-4181050 bp Feature: domain Description: GIIM Note: maturase Location: 4180852-4181050 bp Feature: gene Location: 4181604-4181972 bp Feature: gene Location: 4181968-4182685 bp Feature: domain Description: InsE Location: 4182007-4182256 bp Feature: domain Description: InsE Location: 4182007-4182256 bp Feature: gene Location: 4193825-4194564 bp Feature: domain Description: InsE Location: 4193828-4194167 bp Feature: domain Description: InsE Location: 4193 828-4194167 bp Feature: gene Location: 4194557-4194928 bp Feature: gene Location: 4195237-4196745 bp Ori: QDM06890.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195495-4196227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195495-4196227 bp Feature: domain Description: GIIM Note: maturase Location: 4196302-4196500 bp Feature: domain Description: GIIM Note: maturase Location: 41963 02-4196500 bp Feature: gene Location: 4196835-4197308 bp Feature: domain Description: PHA02517 Location: 4196841-4197306 bp Feature: domain Description: PHA02517 Location: 4196841-41973 06 bp Feature: gene Location: 4197350-4198452 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4197359-4197611 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41973 59-4197611 bp Feature: gene Location: 4198907-4199839 bp Ori: QDM06177.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4199009-4199603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4199009-4199603 bp Feature: gene Location: 4199841-4200809 bp Feature: gene Location: 4201455-4201727 bp Ori: QDM06178.1 Feature: domain Description: PRK09678 Location: 4201464-4201620 bp Feature: domain Description: PRK09678 Location: 4201464-4201620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)