myRT

myRT report for GCA_007035975.1_ASM703597v1

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Seq: AP019634.1 Enterobacter sp. 18A13 DNA, complete genome (4652325 bp)
Overview 1 RT 1: 85695-92587 bp 2 RT 2: 3884545-3889499 bp Neighborhood of RT #1 [85695, 92589] SymE_toxin NTP-PPase_SsMazG NTP-PPase_SsMazG RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Neighborhood of RT #2 [3884545, 3889528] COG3547 DDE_Tnp_IS66 RVT-GII GIIM RVT-GII Smc COG3436 TnpB_IS66 Feature: gene Location: 85695-86036 bp Ori: BBJ65512.1 Feature: domain Description: SymE_toxin Location: 85746-85887 bp Feature: domain Description: SymE_toxin Location: 85746-85887 bp Feature: gene Location: 86397-87425 bp Ori: BBJ65513.1 Feature: domain Description: NTP-PPase_SsMazG Location: 86436-86646 bp Feature: domain Description: NTP-PPase_SsMazG Location: 86436-86646 bp Feature: domain Description: NTP-PPase_SsMazG Location: 86889-87003 bp Feature: domain Description: NTP-PPase_SsMazG Location: 86889-87003 bp Feature: gene Location: 87701-89332 bp Ori: BBJ65514.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88016-88613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8801 6-8861 3 bp Feature: domain Description: TIR_2 Location: 88937-89297 bp Feature: domain Description: TIR_2 Location: 88937-89297 bp Feature: gene Location: 89921-92254 bp Ori: BBJ65515.1 Feature: domain Description: Prim_Zn_Ribbon Location: 90011-90119 bp Feature: domain Description: Prim_Zn_Ribbon Location: 9001 1 -901 1 9 bp Feature: domain Description: COG3378 Location: 90728-92246 bp Feature: domain Description: COG3378 Location: 90728-92246 bp Feature: gene Location: 92269-92589 bp Ori: BBJ65516.1 Feature: domain Description: DUF5375 Location: 92272-92587 bp Feature: domain Description: DUF5375 Location: 92272-92587 bp Feature: gene Location: 3884545-3885660 bp Ori: BBJ69032.1 Feature: domain Description: COG3547 Location: 3884572-3885463 bp Feature: domain Description: COG3547 Location: 3884572-3885463 bp Feature: gene Location: 3885886-3886179 bp Ori: BBJ69033.1 Feature: domain Description: DDE_Tnp_IS66 Location: 3885895-3886135 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3885895-38861 35 bp Feature: gene Location: 3886631-3887491 bp Ori: BBJ69034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886640-3887117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3886640-38871 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 3887198-3887417 bp Feature: domain Description: GIIM Note: maturase Location: 38871 98-388741 7 bp Feature: gene Location: 3887531-3887866 bp Ori: BBJ69035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3887735-3887864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3887735-3887864 bp Feature: gene Location: 3888349-3889161 bp Ori: BBJ69036.1 Feature: domain Description: Smc Location: 3888376-3888619 bp Feature: domain Description: Smc Location: 3888376-388861 9 bp Feature: domain Description: COG3436 Location: 3888655-3889111 bp Feature: domain Description: COG3436 Location: 3888655-38891 1 1 bp Feature: gene Location: 3889181-3889528 bp Ori: BBJ69037.1 Feature: domain Description: TnpB_IS66 Location: 3889208-3889499 bp Feature: domain Description: TnpB_IS66 Location: 3889208-3889499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SymE_toxin (pfam08845), NTP-PPase_SsMazG (cd11535), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII
GIIM (pfam08388), Smc (COG1196), COG3436 (Transposase ), TnpB_IS66 (pfam05717)

Seq: AP019635.1 Enterobacter sp. 18A13 plasmid pECC18A13-1 DNA, complete genome (150509 bp)
Overview 1 RT 1: 50734-55386 bp 2 RT 2: 73594-77899 bp 3 RT 3: 138192-142516 bp Neighborhood of RT #1 [50734, 55386] DUF5431 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [73594, 77913] COG3547 RVT-GII GIIM LysR Neighborhood of RT #3 [138192, 142518] fabG RVT-GII InsE PHA02517 Feature: gene Location: 50734-51042 bp Feature: gene Location: 51197-51409 bp Ori: BBJ69823.1 Gene: mok Feature: domain Description: DUF5431 Location: 51200-51407 bp Feature: domain Description: DUF5431 Location: 512 00-51407 bp Feature: gene Location: 51896-53563 bp Ori: BBJ69824.1 Feature: domain Description: RVT_N Location: 51944-52178 bp Feature: domain Description: RVT_N Location: 51944-52 178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52232-52874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 32 -52 874 bp Feature: domain Description: GIIM Note: maturase Location: 52925-53159 bp Feature: domain Description: GIIM Note: maturase Location: 52 92 5-53159 bp Feature: domain Description: HNHc Note: nucleases Location: 53369-53528 bp Feature: domain Description: HNHc Note: nucleases Location: 53369-5352 8 bp Feature: gene Location: 54636-55031 bp Feature: gene Location: 55093-55386 bp Feature: gene Location: 73594-74709 bp Ori: BBJ69852.1 Feature: domain Description: COG3547 Location: 73621-74512 bp Feature: domain Description: COG3547 Location: 7362 1-74512 bp Feature: gene Location: 75087-75542 bp Feature: gene Location: 75712-76872 bp Ori: BBJ69854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75832-76498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75832 -76498 bp Feature: domain Description: GIIM Note: maturase Location: 76564-76774 bp Feature: domain Description: GIIM Note: maturase Location: 76564-76774 bp Feature: gene Location: 77174-77656 bp Feature: gene Location: 77683-77913 bp Ori: BBJ69856.1 Feature: domain Description: LysR Location: 77686-77899 bp Feature: domain Description: LysR Location: 77686-77899 bp Feature: gene Location: 138192-138923 bp Ori: BBJ69921.1 Feature: domain Description: fabG Location: 138201-138915 bp Feature: domain Description: fabG Location: 1382 01-138915 bp Feature: gene Location: 139742-140197 bp Feature: gene Location: 140367-141284 bp Ori: BBJ69923.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140487-141153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140487-141153 bp Feature: gene Location: 141300-141686 bp Ori: BBJ69924.1 Feature: domain Description: InsE Location: 141321-141627 bp Feature: domain Description: InsE Location: 14132 1-14162 7 bp Feature: gene Location: 141799-142518 bp Ori: BBJ69925.1 Feature: domain Description: PHA02517 Location: 141802-142516 bp Feature: domain Description: PHA02 517 Location: 141802 -142 516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5431 (pfam17496), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3547 (Transposase ), LysR (COG0583), fabG (PRK12825), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)