myRT

myRT report for GCA_007197715.1_ASM719771v1

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Seq: CP041626.1 Dolosigranulum pigrum strain 83VPs-KB5 chromosome, complete genome (2082055 bp)
Overview 1 RT 1: 261037-269181 bp 2 RT 2: 346401-353271 bp 3 RT 3: 1356391-1362566 bp 4 RT 4: 1627066-1631880 bp 5 RT 5: 1803624-1806759 bp 6 RT 6: 1848063-1858379 bp 7 RT 7: 1896838-1903936 bp Neighborhood of RT #1 [261037, 269684] AppF PRK06529 RVT-GII GIIM FACL_FadD13-like FadB fadB Neighborhood of RT #2 [346401, 353333] MdlB RVT-GII GIIM BrnQ Neighborhood of RT #3 [1356391, 1362592] HAD_Pase PRK06481 RVT-GII GIIM tsf rpsB Neighborhood of RT #4 [1627066, 1631936] organ_hyd_perox PRK13357 RVT-GII GIIM NQR2_RnfD_RnfE Neighborhood of RT #5 [1803624, 1806923] ABC_NatA_like INT_ICEBs1_C_like RVT-GII GIIM Neighborhood of RT #6 [1848063, 1858519] PRK05302 rpsL RVT-GII GIIM PRK00566 rpoB Neighborhood of RT #7 [1896838, 1903938] Crp PepSY PepSY RVT-GII GIIM PRK05192 MnmE Feature: gene Location: 261037-261894 bp Ori: QDO90773.1 Feature: domain Description: AppF Location: 261091-261832 bp Feature: domain Description: AppF Location: 261 091 -261 832 bp Feature: gene Location: 262062-263558 bp Ori: QDO90774.1 Feature: domain Description: PRK06529 Location: 262080-263520 bp Feature: domain Description: PRK06529 Location: 262080-263520 bp Feature: gene Location: 264139-265425 bp Ori: QDO92334.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264355-264970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264355-264970 bp Feature: domain Description: GIIM Note: maturase Location: 265030-265261 bp Feature: domain Description: GIIM Note: maturase Location: 265030-265261 bp Feature: gene Location: 265739-267388 bp Ori: QDO90775.1 Feature: domain Description: FACL_FadD13-like Location: 265835-267362 bp Feature: domain Description: FACL_FadD1 3-like Location: 265835-267362 bp Feature: gene Location: 267426-269684 bp Ori: QDO90776.1 Feature: domain Description: FadB Location: 267429-268311 bp Feature: domain Description: FadB Location: 267429-26831 1 bp Feature: domain Description: fadB Location: 268776-269181 bp Feature: domain Description: fadB Location: 268776-2691 81 bp Feature: gene Location: 346401-348275 bp Ori: QDO90851.1 Feature: domain Description: MdlB Location: 346455-348234 bp Feature: domain Description: MdlB Location: 346455-348234 bp Feature: gene Location: 348290-348501 bp Feature: gene Location: 348826-350112 bp Ori: QDO92340.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349042-349657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349042-349657 bp Feature: domain Description: GIIM Note: maturase Location: 349717-349948 bp Feature: domain Description: GIIM Note: maturase Location: 34971 7-349948 bp Feature: gene Location: 350450-351712 bp Feature: gene Location: 351963-353333 bp Ori: QDO90853.1 Gene: brnQ Feature: domain Description: BrnQ Location: 352017-353271 bp Feature: domain Description: BrnQ Location: 35201 7-353271 bp Feature: gene Location: 1356391-1357209 bp Ori: QDO91677.1 Feature: domain Description: HAD_Pase Location: 1356406-1357186 bp Feature: domain Description: HAD_Pase Location: 1 356406-1 3571 86 bp Feature: gene Location: 1357293-1358822 bp Ori: QDO91678.1 Feature: domain Description: PRK06481 Location: 1357308-1358817 bp Feature: domain Description: PRK06481 Location: 1 357308-1 35881 7 bp Feature: gene Location: 1359055-1360341 bp Ori: QDO92387.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359271-1359886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 359271 -1 359886 bp Feature: domain Description: GIIM Note: maturase Location: 1359946-1360177 bp Feature: domain Description: GIIM Note: maturase Location: 1 359946-1 3601 77 bp Feature: gene Location: 1360906-1361781 bp Ori: QDO91679.1 Feature: domain Description: tsf Location: 1360912-1361776 bp Feature: domain Description: tsf Location: 1 36091 2-1 361 776 bp Feature: gene Location: 1361837-1362592 bp Ori: QDO91680.1 Gene: rpsB Feature: domain Description: rpsB Location: 1361840-1362566 bp Feature: domain Description: rpsB Location: 1 361 840-1 362566 bp Feature: gene Location: 1627066-1627497 bp Ori: QDO91914.1 Feature: domain Description: organ_hyd_perox Location: 1627090-1627474 bp Feature: domain Description: organ_hyd_perox Location: 1 627090-1 627474 bp Feature: gene Location: 1627756-1628793 bp Ori: QDO91915.1 Feature: domain Description: PRK13357 Location: 1627777-1628785 bp Feature: domain Description: PRK1 3357 Location: 1 627777-1 628785 bp Feature: gene Location: 1629000-1630286 bp Ori: QDO92405.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1629216-1629831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62921 6-1 629831 bp Feature: domain Description: GIIM Note: maturase Location: 1629891-1630122 bp Feature: domain Description: GIIM Note: maturase Location: 1 629891 -1 6301 22 bp Feature: gene Location: 1630611-1630825 bp Feature: gene Location: 1630851-1631936 bp Ori: QDO91916.1 Feature: domain Description: NQR2_RnfD_RnfE Location: 1630896-1631880 bp Feature: domain Description: NQR2_RnfD_RnfE Location: 1 630896-1 631 880 bp Feature: gene Location: 1803624-1804556 bp Ori: QDO92048.1 Feature: domain Description: ABC_NatA_like Location: 1803672-1804296 bp Feature: domain Description: ABC_NatA_like Location: 1 803672-1 804296 bp Feature: gene Location: 1805285-1805440 bp Ori: QDO92049.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1805291-1805438 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 805291 -1 805438 bp Feature: gene Location: 1805637-1806923 bp Ori: QDO92418.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1805853-1806468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 805853-1 806468 bp Feature: domain Description: GIIM Note: maturase Location: 1806528-1806759 bp Feature: domain Description: GIIM Note: maturase Location: 1 806528-1 806759 bp Feature: gene Location: 1848063-1848533 bp Ori: QDO92074.1 Gene: rpsG Feature: domain Description: PRK05302 Location: 1848066-1848531 bp Feature: domain Description: PRK05302 Location: 1 848066-1 848531 bp Feature: gene Location: 1848579-1848989 bp Ori: QDO92075.1 Feature: domain Description: rpsL Location: 1848582-1848987 bp Feature: domain Description: rpsL Location: 1 848582-1 848987 bp Feature: gene Location: 1849346-1850632 bp Ori: QDO92421.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849562-1850177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849562-1 8501 77 bp Feature: domain Description: GIIM Note: maturase Location: 1850237-1850468 bp Feature: domain Description: GIIM Note: maturase Location: 1 850237-1 850468 bp Feature: gene Location: 1851201-1854848 bp Ori: QDO92076.1 Gene: rpoC Feature: domain Description: PRK00566 Location: 1851216-1854780 bp Feature: domain Description: PRK00566 Location: 1 851 21 6-1 854780 bp Feature: gene Location: 1854938-1858519 bp Ori: QDO92077.1 Feature: domain Description: rpoB Location: 1854968-1858379 bp Feature: domain Description: rpoB Location: 1 854968-1 858379 bp Feature: gene Location: 1896838-1897509 bp Ori: QDO92107.1 Feature: domain Description: Crp Location: 1896868-1897471 bp Feature: domain Description: Crp Location: 1 896868-1 897471 bp Feature: gene Location: 1898143-1898601 bp Ori: QDO92108.1 Feature: domain Description: PepSY Location: 1898209-1898386 bp Feature: domain Description: PepSY Location: 1 898209-1 898386 bp Feature: domain Description: PepSY Location: 1898437-1898599 bp Feature: domain Description: PepSY Location: 1 898437-1 898599 bp Feature: gene Location: 1898716-1900002 bp Ori: QDO92426.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898932-1899547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 898932-1 899547 bp Feature: domain Description: GIIM Note: maturase Location: 1899607-1899838 bp Feature: domain Description: GIIM Note: maturase Location: 1 899607-1 899838 bp Feature: gene Location: 1900515-1902401 bp Ori: QDO92109.1 Gene: mnmG Feature: domain Description: PRK05192 Location: 1900539-1902390 bp Feature: domain Description: PRK051 92 Location: 1 900539-1 902390 bp Feature: gene Location: 1902556-1903938 bp Ori: QDO92427.1 Gene: mnmE Feature: domain Description: MnmE Location: 1902562-1903936 bp Feature: domain Description: MnmE Location: 1 902562-1 903936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AppF (COG4608), PRK06529 (amidase; Provisional), RVT-GII, GIIM (pfam08388), FACL_FadD13-like (cd17631), FadB (TIGR02437), fadB (PRK11730), MdlB (COG1132), BrnQ (COG1114), HAD_Pase (cd16418)
PRK06481 (flavocytochrome c), tsf (TIGR00116), rpsB (PRK12311), organ_hyd_perox (TIGR03561), PRK13357 (branched-chain amino acid aminotransferase; Provisional), NQR2_RnfD_RnfE (pfam03116), ABC_NatA_like (cd03267), INT_ICEBs1_C_like (cd01189), PRK05302 (30S ribosomal protein S7; Validated), rpsL (PRK05163)
PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013), Crp (pfam00325), PepSY (pfam03413), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG), MnmE (COG0486)