myRT

myRT report for GCA_007361935.1_ASM736193v1

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Seq: CP041667.1 Lachnospiraceae bacterium KGMB03038 chromosome, complete genome (3334474 bp)
Overview 1 RT 1: 740261-745497 bp 2 RT 2: 1201084-1211047 bp 3 RT 3: 1749910-1755475 bp 4 RT 4: 1816193-1820314 bp 5 RT 5: 2660325-2665868 bp 6 RT 6: 2844302-2849426 bp Neighborhood of RT #1 [740261, 745497] DUF3801 T4SS-DNA_transf T4SS-DNA_transf RVT-GII TraG-D_C Neighborhood of RT #2 [1201084, 1211055] HsdM COG4646 RVT-GII Intron_maturas2 HNHc COG4646 TnpV Neighborhood of RT #3 [1749910, 1755528] Fe-ADH-like PucR GGDEF_2 PucR RVT-GII GIIM Aldo_ket_red Fer4_17 Neighborhood of RT #4 [1816193, 1820314] NusG_II ApbE RVT-GII GIIM Neighborhood of RT #5 [2660325, 2665882] DUF1444 CwlO1 Hydrolase_2 RVT-GII GIIM PRK12814 FeFe_hydrog_A Fe_hyd_SSU Neighborhood of RT #6 [2844302, 2849470] VirD4 RVT-GII VirD4 DUF3801 Feature: gene Location: 740261-740761 bp Feature: domain Description: DUF3801 Location: 740339-740735 bp Feature: domain Description: DUF3801 Location: 740339-740735 bp Feature: gene Location: 740758-741624 bp Feature: domain Description: T4SS-DNA_transf Location: 741157-741310 bp Feature: domain Description: T4SS-DNA_transf Location: 741 1 57-741 31 0 bp Feature: domain Description: T4SS-DNA_transf Location: 741397-741559 bp Feature: domain Description: T4SS-DNA_transf Location: 741 397-741 559 bp Feature: gene Location: 742249-744156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742579-743323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742579-743323 bp Feature: gene Location: 744346-745329 bp Feature: domain Description: TraG-D_C Location: 744769-745123 bp Feature: domain Description: TraG-D_C Location: 744769-7451 23 bp Feature: gene Location: 745339-745497 bp Feature: gene Location: 1201084-1201302 bp Feature: gene Location: 1201457-1207336 bp Feature: domain Description: HsdM Location: 1204502-1205075 bp Feature: domain Description: HsdM Location: 1 204502-1 205075 bp Feature: domain Description: COG4646 Location: 1205180-1207322 bp Feature: domain Description: COG4646 Location: 1 2051 80-1 207322 bp Feature: gene Location: 1207912-1209726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1208179-1208995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2081 79-1 208995 bp Feature: domain Description: Intron_maturas2 Location: 1209064-1209394 bp Feature: domain Description: Intron_maturas2 Location: 1 209064-1 209394 bp Feature: domain Description: HNHc Note: nucleases Location: 1209544-1209691 bp Feature: domain Description: HNHc Note: nucleases Location: 1 209544-1 209691 bp Feature: gene Location: 1209723-1210700 bp Feature: domain Description: COG4646 Location: 1209834-1210251 bp Feature: domain Description: COG4646 Location: 1 209834-1 21 0251 bp Feature: gene Location: 1210681-1211055 bp Feature: domain Description: TnpV Location: 1210717-1211047 bp Feature: domain Description: TnpV Location: 1 21 071 7-1 21 1 047 bp Feature: gene Location: 1749910-1751067 bp Feature: domain Description: Fe-ADH-like Location: 1749931-1751056 bp Feature: domain Description: Fe-ADH-like Location: 1 749931 -1 751 056 bp Feature: gene Location: 1751184-1752359 bp Feature: domain Description: PucR Location: 1751265-1751547 bp Feature: domain Description: PucR Location: 1 751 265-1 751 547 bp Feature: domain Description: GGDEF_2 Location: 1751649-1751949 bp Feature: domain Description: GGDEF_2 Location: 1 751 649-1 751 949 bp Feature: domain Description: PucR Location: 1752054-1752294 bp Feature: domain Description: PucR Location: 1 752054-1 752294 bp Feature: gene Location: 1752607-1753998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1752922-1753546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 752922-1 753546 bp Feature: domain Description: GIIM Note: maturase Location: 1753603-1753819 bp Feature: domain Description: GIIM Note: maturase Location: 1 753603-1 75381 9 bp Feature: gene Location: 1754237-1754422 bp Feature: gene Location: 1754509-1755528 bp Feature: domain Description: Aldo_ket_red Location: 1754527-1755100 bp Feature: domain Description: Aldo_ket_red Location: 1 754527-1 7551 00 bp Feature: domain Description: Fer4_17 Location: 1755283-1755475 bp Feature: domain Description: Fer4_1 7 Location: 1 755283-1 755475 bp Feature: gene Location: 1816193-1816564 bp Feature: domain Description: NusG_II Location: 1816232-1816532 bp Feature: domain Description: NusG_II Location: 1 81 6232-1 81 6532 bp Feature: gene Location: 1816688-1817677 bp Feature: domain Description: ApbE Location: 1816706-1817672 bp Feature: domain Description: ApbE Location: 1 81 6706-1 81 7672 bp Feature: gene Location: 1817755-1819146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1818070-1818694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 8070-1 81 8694 bp Feature: domain Description: GIIM Note: maturase Location: 1818751-1818967 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 8751 -1 81 8967 bp Feature: gene Location: 1819460-1819612 bp Feature: gene Location: 1819634-1820314 bp Feature: gene Location: 2660325-2660912 bp Feature: domain Description: DUF1444 Location: 2660340-2660775 bp Feature: domain Description: DUF1 444 Location: 2660340-2660775 bp Feature: gene Location: 2661106-2662167 bp Feature: domain Description: CwlO1 Location: 2661211-2661754 bp Feature: domain Description: CwlO1 Location: 2661 21 1 -2661 754 bp Feature: domain Description: Hydrolase_2 Location: 2661883-2662126 bp Feature: domain Description: Hydrolase_2 Location: 2661 883-26621 26 bp Feature: gene Location: 2662254-2663645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662569-2663193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662569-26631 93 bp Feature: domain Description: GIIM Note: maturase Location: 2663250-2663466 bp Feature: domain Description: GIIM Note: maturase Location: 2663250-2663466 bp Feature: gene Location: 2663959-2664114 bp Feature: gene Location: 2664149-2665882 bp Feature: domain Description: PRK12814 Location: 2664155-2664449 bp Feature: domain Description: PRK1 281 4 Location: 26641 55-2664449 bp Feature: domain Description: FeFe_hydrog_A Location: 2664569-2665700 bp Feature: domain Description: FeFe_hydrog_A Location: 2664569-2665700 bp Feature: domain Description: Fe_hyd_SSU Location: 2665727-2665868 bp Feature: domain Description: Fe_hyd_SSU Location: 2665727-2665868 bp Feature: gene Location: 2844302-2844469 bp Feature: gene Location: 2844462-2845433 bp Feature: domain Description: VirD4 Location: 2844522-2845293 bp Feature: domain Description: VirD4 Location: 2844522-2845293 bp Feature: gene Location: 2845656-2847563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845986-2846730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845986-2846730 bp Feature: gene Location: 2848188-2848991 bp Feature: domain Description: VirD4 Location: 2848401-2848929 bp Feature: domain Description: VirD4 Location: 2848401 -2848929 bp Feature: gene Location: 2848988-2849470 bp Feature: domain Description: DUF3801 Location: 2849063-2849426 bp Feature: domain Description: DUF3801 Location: 2849063-2849426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), T4SS-DNA_transf (pfam02534), RVT-GII, TraG-D_C (pfam12696), HsdM (COG0286), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), TnpV (pfam14198), Fe-ADH-like (cd17814)
PucR (pfam07905), GGDEF_2 (pfam17853), GIIM (pfam08388), Aldo_ket_red (pfam00248), Fer4_17 (pfam13534), NusG_II (pfam07009), ApbE (pfam02424), DUF1444 (pfam07285), CwlO1 (COG3883), Hydrolase_2 (pfam07486)
PRK12814 (putative NADPH-dependent glutamate synthase small subunit; Provisional), FeFe_hydrog_A (TIGR02512), Fe_hyd_SSU (smart00902), VirD4 (COG3505)