myRT

myRT report for GCA_007362475.1_ASM736247v1

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Seq: CP041688.1 Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence (66482 bp)
Overview 1 RT 1: 7089-12646 bp Neighborhood of RT #1 [7089, 12777] SRPBCC_4 CAP_ED RVT-GII GIIM GLPGLI DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 7089-7517 bp Ori: QDP86712.1 Feature: domain Description: SRPBCC_4 Location: 7101-7509 bp Feature: domain Description: SRPBCC_4 Location: 71 01 -7509 bp Feature: gene Location: 7607-8179 bp Ori: QDP86713.1 Feature: domain Description: CAP_ED Location: 7643-7937 bp Feature: domain Description: CAP_ED Location: 7643-7937 bp Feature: gene Location: 8995-10311 bp Ori: QDP86714.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9190-9805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 90-9805 bp Feature: domain Description: GIIM Note: maturase Location: 9880-10090 bp Feature: domain Description: GIIM Note: maturase Location: 9880-1 0090 bp Feature: gene Location: 10368-11231 bp Ori: QDP86715.1 Feature: domain Description: GLPGLI Location: 10374-11049 bp Feature: domain Description: GLPGLI Location: 1 0374-1 1 049 bp Feature: gene Location: 11776-12777 bp Ori: QDP86716.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 11800-12217 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 1 800-1 221 7 bp Feature: domain Description: Transposase_20 Location: 12391-12646 bp Feature: domain Description: Transposase_20 Location: 1 2391 -1 2646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRPBCC_4 (cd07822), CAP_ED (cl00047), RVT-GII, GIIM (pfam08388), GLPGLI (TIGR01200), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: CP041687.1 Chryseobacterium sp. SNU WT5 chromosome, complete genome (2973614 bp)
Overview 1 RT 1: 261645-267028 bp 2 RT 2: 518187-523643 bp 3 RT 3: 2128681-2160319 bp Neighborhood of RT #1 [261645, 267057] RVT-GII GIIM rpsF Neighborhood of RT #2 [518187, 523643] RVT-GII GIIM Neighborhood of RT #3 [2128681, 2160319] RVT-GII GIIM YwqK RVT-GII GIIM ACR3 OsmC HTH_ARSR RVT-GII GIIM DUF3995 PRK06753 CAP_ED Abi_C RVT-GII GIIM metQ PRK10782 DUF4395 PRK11272 RVT-GII GIIM YgiN AraC RVT-GII GIIM Feature: gene Location: 261645-262619 bp Feature: gene Location: 262939-263460 bp Feature: gene Location: 263530-264846 bp Ori: QDP84248.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263725-264340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6372 5-2 64340 bp Feature: domain Description: GIIM Note: maturase Location: 264415-264625 bp Feature: domain Description: GIIM Note: maturase Location: 2 64415-2 6462 5 bp Feature: gene Location: 265560-266111 bp Feature: gene Location: 266716-267057 bp Ori: QDP84250.1 Feature: domain Description: rpsF Location: 266719-267028 bp Feature: domain Description: rpsF Location: 2 66719-2 6702 8 bp Feature: gene Location: 518187-518765 bp Feature: gene Location: 518949-519926 bp Feature: gene Location: 520571-521887 bp Ori: QDP84474.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520766-521381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 0766-52 1381 bp Feature: domain Description: GIIM Note: maturase Location: 521456-521666 bp Feature: domain Description: GIIM Note: maturase Location: 52 1456-52 1666 bp Feature: gene Location: 521946-522686 bp Feature: gene Location: 523017-523643 bp Feature: gene Location: 2128681-2128944 bp Feature: gene Location: 2129194-2129547 bp Feature: gene Location: 2130246-2131562 bp Ori: QDP85874.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130441-2131056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 130441-2 131056 bp Feature: domain Description: GIIM Note: maturase Location: 2131131-2131341 bp Feature: domain Description: GIIM Note: maturase Location: 2 131131-2 131341 bp Feature: gene Location: 2131618-2132103 bp Ori: QDP85875.1 Feature: domain Description: YwqK Location: 2131804-2132098 bp Feature: domain Description: YwqK Location: 2 131804-2 132 098 bp Feature: gene Location: 2132747-2134063 bp Ori: QDP85876.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132942-2133557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 132 942 -2 133557 bp Feature: domain Description: GIIM Note: maturase Location: 2133632-2133842 bp Feature: domain Description: GIIM Note: maturase Location: 2 133632 -2 133842 bp Feature: gene Location: 2134125-2135180 bp Ori: QDP85877.1 Gene: arsB Feature: domain Description: ACR3 Location: 2134128-2135157 bp Feature: domain Description: ACR3 Location: 2 13412 8-2 135157 bp Feature: gene Location: 2135194-2135610 bp Ori: QDP85878.1 Feature: domain Description: OsmC Location: 2135299-2135569 bp Feature: domain Description: OsmC Location: 2 1352 99-2 135569 bp Feature: gene Location: 2136307-2136774 bp Feature: gene Location: 2136830-2137138 bp Ori: QDP85881.1 Feature: domain Description: HTH_ARSR Location: 2136872-2137064 bp Feature: domain Description: HTH_ARSR Location: 2 136872 -2 137064 bp Feature: gene Location: 2138094-2139410 bp Ori: QDP85882.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2138289-2138904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1382 89-2 138904 bp Feature: domain Description: GIIM Note: maturase Location: 2138979-2139189 bp Feature: domain Description: GIIM Note: maturase Location: 2 138979-2 139189 bp Feature: gene Location: 2139467-2139895 bp Ori: QDP85883.1 Feature: domain Description: DUF3995 Location: 2139509-2139869 bp Feature: domain Description: DUF3995 Location: 2 139509-2 139869 bp Feature: gene Location: 2139892-2141025 bp Ori: QDP85884.1 Feature: domain Description: PRK06753 Location: 2139904-2141014 bp Feature: domain Description: PRK06753 Location: 2 139904-2 141014 bp Feature: gene Location: 2142618-2143190 bp Ori: QDP85886.1 Feature: domain Description: CAP_ED Location: 2142654-2142960 bp Feature: domain Description: CAP_ED Location: 2 142 654-2 142 960 bp Feature: gene Location: 2143514-2144257 bp Ori: QDP85887.1 Feature: domain Description: Abi_C Location: 2144000-2144219 bp Feature: domain Description: Abi_C Location: 2 144000-2 1442 19 bp Feature: gene Location: 2144979-2146295 bp Ori: QDP85888.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145174-2145789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 145174-2 145789 bp Feature: domain Description: GIIM Note: maturase Location: 2145864-2146074 bp Feature: domain Description: GIIM Note: maturase Location: 2 145864-2 146074 bp Feature: gene Location: 2146704-2147513 bp Ori: QDP85889.1 Feature: domain Description: metQ Location: 2146740-2147511 bp Feature: domain Description: metQ Location: 2 146740-2 147511 bp Feature: gene Location: 2147537-2148193 bp Ori: QDP85890.1 Gene: metI Feature: domain Description: PRK10782 Location: 2147549-2148191 bp Feature: domain Description: PRK10782 Location: 2 147549-2 148191 bp Feature: gene Location: 2149211-2149666 bp Ori: QDP85892.1 Feature: domain Description: DUF4395 Location: 2149247-2149619 bp Feature: domain Description: DUF4395 Location: 2 1492 47-2 149619 bp Feature: gene Location: 2149680-2150687 bp Ori: QDP85893.1 Feature: domain Description: PRK11272 Location: 2149704-2150595 bp Feature: domain Description: PRK112 72 Location: 2 149704-2 150595 bp Feature: gene Location: 2151956-2153272 bp Ori: QDP85894.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2152151-2152766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 152 151-2 152 766 bp Feature: domain Description: GIIM Note: maturase Location: 2152841-2153051 bp Feature: domain Description: GIIM Note: maturase Location: 2 152 841-2 153051 bp Feature: gene Location: 2153333-2154325 bp Feature: gene Location: 2154915-2155208 bp Ori: QDP85896.1 Feature: domain Description: YgiN Location: 2154924-2155197 bp Feature: domain Description: YgiN Location: 2 15492 4-2 155197 bp Feature: gene Location: 2155309-2156169 bp Ori: QDP85897.1 Feature: domain Description: AraC Location: 2155885-2156164 bp Feature: domain Description: AraC Location: 2 155885-2 156164 bp Feature: gene Location: 2156411-2157367 bp Feature: gene Location: 2158016-2159332 bp Ori: QDP85899.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158211-2158826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1582 11-2 15882 6 bp Feature: domain Description: GIIM Note: maturase Location: 2158901-2159111 bp Feature: domain Description: GIIM Note: maturase Location: 2 158901-2 159111 bp Feature: gene Location: 2159391-2159759 bp Feature: gene Location: 2159765-2160319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rpsF (PRK14074), YwqK (COG2849), ACR3 (COG0798), OsmC (pfam02566), HTH_ARSR (smart00418), DUF3995 (pfam13160), PRK06753 (hypothetical protein; Provisional), CAP_ED (cl00047)
Abi_C (pfam14355), metQ (PRK11063), PRK10782 (D-methionine ABC transporter permease MetI), DUF4395 (pfam14340), PRK11272 (putative DMT superfamily transporter inner membrane protein; Provisional), YgiN (COG1359), AraC (COG2207)