myRT

myRT report for GCA_007362955.1_ASM736295v1

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Seq: CP041696.1 Lysinibacillus fusiformis strain 1226 chromosome, complete genome (4971350 bp)
Overview 1 RT 1: 754255-759364 bp 2 RT 2: 767875-774168 bp 3 RT 3: 931381-937386 bp 4 RT 4: 1062967-1067431 bp 5 RT 5: 1115405-1122332 bp 6 RT 6: 1878270-1883994 bp 7 RT 7: 1929749-1932429 bp 8 RT 8: 3274321-3278951 bp 9 RT 9: 3671495-3678578 bp 10 RT 10: 4005310-4010948 bp 11 RT 11: 4020375-4024673 bp 12 RT 12: 4815028-4818082 bp Neighborhood of RT #1 [754255, 759364] PRK00685 PepP RVT-GII RimL Neighborhood of RT #2 [767875, 774188] DUF3953 AAA_18 RVT-GII HNHc adh_short_C2 alaDH Neighborhood of RT #3 [931381, 937391] PRK03137 RocR RocR RVT-GII GIIM PRK08059 Neighborhood of RT #4 [1062967, 1067431] RVT-GII GIIM sigma70-ECF Neighborhood of RT #5 [1115405, 1122475] PaiB DUF836 RVT-GII GIIM DAP2 YgcG Neighborhood of RT #6 [1878270, 1884002] RraA MFS_LmrB_MDR_like RVT-GII PAS_3 Tar TIGR00730 Neighborhood of RT #7 [1929749, 1932536] Pat_ExoU_VipD_like RVT-GII GIIM Neighborhood of RT #8 [3274321, 3278968] HTH_GlnR-like GlnA RVT-GII GIIM YciW Neighborhood of RT #9 [3671495, 3678578] CitA CitA PspC group_II_RT_mat RVT-GII AnsP Neighborhood of RT #10 [4005310, 4011162] ASCH DUF3953 RVT-GII group_II_RT_mat DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #11 [4020375, 4024897] YdiL DUF3953 RVT-GII GIIM MerR zf_CopZ Neighborhood of RT #12 [4815028, 4818159] Phage_TAC_5 YpjP RVT-GII YcjR Feature: gene Location: 754255-754938 bp Ori: QDP99756.1 Feature: domain Description: PRK00685 Location: 754258-754930 bp Feature: domain Description: PRK00685 Location: 754258-754930 bp Feature: gene Location: 755068-756156 bp Ori: QDP99757.1 Feature: domain Description: PepP Location: 755077-756151 bp Feature: domain Description: PepP Location: 755077-7561 51 bp Feature: gene Location: 756383-757637 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756581-757193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756581 -7571 93 bp Feature: gene Location: 758532-759056 bp Ori: QDP99758.1 Feature: domain Description: RimL Location: 758640-759021 bp Feature: domain Description: RimL Location: 758640-759021 bp Feature: gene Location: 759167-759364 bp Feature: gene Location: 767875-768108 bp Ori: QDP99767.1 Feature: domain Description: DUF3953 Location: 767971-768088 bp Feature: domain Description: DUF3953 Location: 767971 -768088 bp Feature: gene Location: 768254-768874 bp Ori: QDP99768.1 Feature: domain Description: AAA_18 Location: 768275-768716 bp Feature: domain Description: AAA_1 8 Location: 768275-76871 6 bp Feature: gene Location: 769082-770854 bp Ori: QDQ03306.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769340-770036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769340-770036 bp Feature: domain Description: HNHc Note: nucleases Location: 770591-770723 bp Feature: domain Description: HNHc Note: nucleases Location: 770591 -770723 bp Feature: gene Location: 772019-772201 bp Feature: domain Description: adh_short_C2 Location: 772040-772193 bp Feature: domain Description: adh_short_C2 Location: 772040-7721 93 bp Feature: gene Location: 773067-774188 bp Ori: QDP99769.1 Gene: ald Feature: domain Description: alaDH Location: 773070-774168 bp Feature: domain Description: alaDH Location: 773070-7741 68 bp Feature: gene Location: 931381-932925 bp Ori: QDP99884.1 Gene: pruA Feature: domain Description: PRK03137 Location: 931387-932923 bp Feature: domain Description: PRK031 37 Location: 931 387-932923 bp Feature: gene Location: 933075-934382 bp Ori: QDP99885.1 Feature: domain Description: RocR Location: 933108-933657 bp Feature: domain Description: RocR Location: 9331 08-933657 bp Feature: domain Description: RocR Location: 933735-934374 bp Feature: domain Description: RocR Location: 933735-934374 bp Feature: gene Location: 934503-935768 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934701-935319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934701 -93531 9 bp Feature: domain Description: GIIM Note: maturase Location: 935367-935574 bp Feature: domain Description: GIIM Note: maturase Location: 935367-935574 bp Feature: gene Location: 936674-936907 bp Feature: gene Location: 937014-937391 bp Ori: QDP99887.1 Gene: yugI Feature: domain Description: PRK08059 Location: 937017-937386 bp Feature: domain Description: PRK08059 Location: 93701 7-937386 bp Feature: gene Location: 1062967-1063308 bp Feature: gene Location: 1063343-1063546 bp Feature: gene Location: 1064053-1065318 bp Ori: QDQ00004.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064251-1064869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064251 -1 064869 bp Feature: domain Description: GIIM Note: maturase Location: 1064917-1065124 bp Feature: domain Description: GIIM Note: maturase Location: 1 06491 7-1 0651 24 bp Feature: gene Location: 1066394-1066795 bp Ori: QDQ00005.1 Feature: domain Description: sigma70-ECF Location: 1066457-1066754 bp Feature: domain Description: sigma70-ECF Location: 1 066457-1 066754 bp Feature: gene Location: 1067012-1067431 bp Feature: gene Location: 1115405-1116013 bp Ori: QDQ00046.1 Feature: domain Description: PaiB Location: 1115408-1116005 bp Feature: domain Description: PaiB Location: 1 1 1 5408-1 1 1 6005 bp Feature: gene Location: 1116057-1116287 bp Ori: QDQ00047.1 Feature: domain Description: DUF836 Location: 1116066-1116231 bp Feature: domain Description: DUF836 Location: 1 1 1 6066-1 1 1 6231 bp Feature: gene Location: 1117353-1118618 bp Ori: QDQ00048.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117551-1118169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 7551 -1 1 1 81 69 bp Feature: domain Description: GIIM Note: maturase Location: 1118217-1118424 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 821 7-1 1 1 8424 bp Feature: gene Location: 1119215-1121485 bp Ori: QDQ00049.1 Feature: domain Description: DAP2 Location: 1119632-1121483 bp Feature: domain Description: DAP2 Location: 1 1 1 9632-1 1 21 483 bp Feature: gene Location: 1121723-1122475 bp Ori: QDQ00050.1 Feature: domain Description: YgcG Location: 1121741-1122332 bp Feature: domain Description: YgcG Location: 1 1 21 741 -1 1 22332 bp Feature: gene Location: 1878270-1878890 bp Ori: QDQ00643.1 Feature: domain Description: RraA Location: 1878294-1878873 bp Feature: domain Description: RraA Location: 1 878294-1 878873 bp Feature: gene Location: 1879080-1880510 bp Ori: QDQ00644.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 1879134-1880475 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 1 8791 34-1 880475 bp Feature: gene Location: 1880562-1881826 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880760-1881198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 880760-1 881 1 98 bp Feature: gene Location: 1882417-1883325 bp Ori: QDQ00645.1 Feature: domain Description: PAS_3 Location: 1882516-1882765 bp Feature: domain Description: PAS_3 Location: 1 88251 6-1 882765 bp Feature: domain Description: Tar Location: 1882765-1883311 bp Feature: domain Description: Tar Location: 1 882765-1 88331 1 bp Feature: gene Location: 1883484-1884002 bp Ori: QDQ03361.1 Feature: domain Description: TIGR00730 Location: 1883487-1883994 bp Feature: domain Description: TIGR00730 Location: 1 883487-1 883994 bp Feature: gene Location: 1929749-1930642 bp Ori: QDQ00683.1 Feature: domain Description: Pat_ExoU_VipD_like Location: 1929767-1930343 bp Feature: domain Description: Pat_ExoU_VipD_like Location: 1 929767-1 930343 bp Feature: gene Location: 1931439-1932536 bp Ori: QDQ00684.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931637-1932255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 637-1 932255 bp Feature: domain Description: GIIM Note: maturase Location: 1932303-1932429 bp Feature: domain Description: GIIM Note: maturase Location: 1 932303-1 932429 bp Feature: gene Location: 3274321-3274695 bp Ori: QDQ01849.1 Feature: domain Description: HTH_GlnR-like Location: 3274357-3274624 bp Feature: domain Description: HTH_GlnR-like Location: 3274357-3274624 bp Feature: gene Location: 3274796-3276130 bp Ori: QDQ01850.1 Gene: glnA Feature: domain Description: GlnA Location: 3274817-3276119 bp Feature: domain Description: GlnA Location: 327481 7-32761 1 9 bp Feature: gene Location: 3276722-3277987 bp Ori: QDQ01851.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276920-3277538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276920-3277538 bp Feature: domain Description: GIIM Note: maturase Location: 3277586-3277793 bp Feature: domain Description: GIIM Note: maturase Location: 3277586-3277793 bp Feature: gene Location: 3278122-3278271 bp Feature: gene Location: 3278525-3278968 bp Ori: QDQ01853.1 Feature: domain Description: YciW Location: 3278561-3278951 bp Feature: domain Description: YciW Location: 3278561 -3278951 bp Feature: gene Location: 3671495-3672802 bp Ori: QDQ02178.1 Feature: domain Description: CitA Location: 3671519-3672140 bp Feature: domain Description: CitA Location: 3671 51 9-36721 40 bp Feature: domain Description: CitA Location: 3672194-3672797 bp Feature: domain Description: CitA Location: 36721 94-3672797 bp Feature: gene Location: 3673421-3673603 bp Ori: QDQ02179.1 Feature: domain Description: PspC Location: 3673430-3673583 bp Feature: domain Description: PspC Location: 3673430-3673583 bp Feature: gene Location: 3674705-3676052 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3674792-3674882 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3674792-3674882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3674888-3675239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3674888-3675239 bp Feature: gene Location: 3676719-3678080 bp Ori: QDQ02180.1 Feature: domain Description: AnsP Location: 3676731-3678072 bp Feature: domain Description: AnsP Location: 3676731 -3678072 bp Feature: gene Location: 3678348-3678578 bp Feature: gene Location: 4005310-4005654 bp Feature: domain Description: ASCH Location: 4005316-4005637 bp Feature: domain Description: ASCH Location: 400531 6-4005637 bp Feature: gene Location: 4005648-4005881 bp Ori: QDQ02438.1 Feature: domain Description: DUF3953 Location: 4005744-4005861 bp Feature: domain Description: DUF3953 Location: 4005744-4005861 bp Feature: gene Location: 4006497-4007468 bp Ori: QDQ02439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006695-4007028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006695-4007028 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4007043-4007262 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4007043-4007262 bp Feature: gene Location: 4008993-4009607 bp Feature: gene Location: 4009883-4011162 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4009940-4010420 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 4009940-401 0420 bp Feature: domain Description: Transposase_20 Location: 4010744-4010948 bp Feature: domain Description: Transposase_20 Location: 401 0744-401 0948 bp Feature: gene Location: 4020375-4021259 bp Ori: QDQ02445.1 Feature: domain Description: YdiL Location: 4020447-4021203 bp Feature: domain Description: YdiL Location: 4020447-4021 203 bp Feature: gene Location: 4021510-4021743 bp Ori: QDQ02446.1 Feature: domain Description: DUF3953 Location: 4021606-4021723 bp Feature: domain Description: DUF3953 Location: 4021 606-4021 723 bp Feature: gene Location: 4022359-4023660 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022557-4023175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022557-40231 75 bp Feature: domain Description: GIIM Note: maturase Location: 4023223-4023430 bp Feature: domain Description: GIIM Note: maturase Location: 4023223-4023430 bp Feature: gene Location: 4024027-4024371 bp Feature: domain Description: MerR Location: 4024030-4024354 bp Feature: domain Description: MerR Location: 4024030-4024354 bp Feature: gene Location: 4024436-4024897 bp Ori: QDQ02447.1 Feature: domain Description: zf_CopZ Location: 4024493-4024673 bp Feature: domain Description: zf_CopZ Location: 4024493-4024673 bp Feature: gene Location: 4815028-4815129 bp Ori: QDQ03516.1 Feature: domain Description: Phage_TAC_5 Location: 4815031-4815124 bp Feature: domain Description: Phage_TAC_5 Location: 481 5031 -481 51 24 bp Feature: gene Location: 4815298-4815906 bp Ori: QDQ03118.1 Feature: domain Description: YpjP Location: 4815514-4815898 bp Feature: domain Description: YpjP Location: 481 551 4-481 5898 bp Feature: gene Location: 4816422-4816703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4816614-4816698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 661 4-481 6698 bp Feature: gene Location: 4816959-4817192 bp Feature: gene Location: 4817335-4818159 bp Ori: QDQ03120.1 Feature: domain Description: YcjR Location: 4817338-4818082 bp Feature: domain Description: YcjR Location: 481 7338-481 8082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00685 (metal-dependent hydrolase; Provisional), PepP (COG0006), RVT-GII, RimL (COG1670), DUF3953 (pfam13129), AAA_18 (pfam13238), HNHc (smart00507), adh_short_C2 (pfam13561), alaDH (TIGR00518), PRK03137 (1-pyrroline-5-carboxylate dehydrogenase; Provisional)
RocR (COG3829), GIIM (pfam08388), PRK08059 (general stress protein 13; Validated), sigma70-ECF (TIGR02937), PaiB (COG2808), DUF836 (pfam05768), DAP2 (COG1506), YgcG (COG1512), RraA (COG0684), MFS_LmrB_MDR_like (cd17503)
PAS_3 (pfam08447), Tar (COG0840), TIGR00730 (TIGR00730 family protein), Pat_ExoU_VipD_like (cd07207), HTH_GlnR-like (cd01105), GlnA (TIGR00653), YciW (COG2128), CitA (COG3290), PspC (pfam04024), group_II_RT_mat (TIGR04416)
AnsP (COG1113), ASCH (smart01022), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), YdiL (COG1266), MerR (TIGR02051), zf_CopZ (pfam18423), Phage_TAC_5 (pfam08890), YpjP (pfam14005), YcjR (COG1082)