myRT

myRT report for GCA_007559125.1_ASM755912v1

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Seq: CP041772.1 Pseudomonas aeruginosa strain 243931 chromosome, complete genome (6514208 bp)
Overview 1 RT 1: 3034308-3044614 bp Neighborhood of RT #1 [3034308, 3044616] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 3034308-3035429 bp Ori: QDR21025.1 Feature: domain Description: COG3177 Location: 3034326-3035418 bp Feature: domain Description: COG31 77 Location: 3034326-303541 8 bp Feature: gene Location: 3035688-3035824 bp Feature: gene Location: 3036153-3037838 bp Ori: QDR21026.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3036210-3036450 bp Feature: domain Description: RVT_N Location: 303621 0-3036450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036498-3037134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036498-30371 34 bp Feature: domain Description: GIIM Note: maturase Location: 3037188-3037419 bp Feature: domain Description: GIIM Note: maturase Location: 30371 88-303741 9 bp Feature: domain Description: HNH Note: nucleases Location: 3037671-3037809 bp Feature: domain Description: HNH Note: nucleases Location: 3037671 -3037809 bp Feature: gene Location: 3038919-3042656 bp Ori: QDR21027.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 3039027-3039684 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3039027-3039684 bp Feature: domain Description: PRK09776 Location: 3039897-3040368 bp Feature: domain Description: PRK09776 Location: 3039897-3040368 bp Feature: domain Description: PAS Location: 3040428-3040950 bp Feature: domain Description: PAS Location: 3040428-3040950 bp Feature: domain Description: PRK10060 Location: 3040959-3042606 bp Feature: domain Description: PRK1 0060 Location: 3040959-3042606 bp Feature: gene Location: 3042763-3044616 bp Ori: QDR21028.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 3042775-3044614 bp Feature: domain Description: PRK05658 Location: 3042775-304461 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)