myRT

myRT report for GCA_007633355.1_ASM763335v1

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Seq: CP041933.1 Pseudomonas sp. BJP69 chromosome, complete genome (5597068 bp)
Overview 1 RT 1: 1214104-1219135 bp 2 RT 2: 2626068-2631058 bp 3 RT 3: 4767596-4772772 bp Neighborhood of RT #1 [1214104, 1220331] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII KAP_NTPase KAP_NTPase Neighborhood of RT #2 [2626068, 2631285] PinE DUF4763 COG3436 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C HDc Neighborhood of RT #3 [4767596, 4772807] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 1214104-1214460 bp Ori: QDR70895.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 1214131-1214425 bp Feature: domain Description: TnpB_IS66 Location: 1 21 41 31 -1 21 4425 bp Feature: gene Location: 1214479-1216011 bp Ori: QDR67177.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1214584-1214797 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 21 4584-1 21 4797 bp Feature: domain Description: zf-IS66 Location: 1214827-1214950 bp Feature: domain Description: zf-IS66 Location: 1 21 4827-1 21 4950 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1214995-1215850 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 21 4995-1 21 5850 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1215871-1215985 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 21 5871 -1 21 5985 bp Feature: gene Location: 1216319-1217911 bp Ori: QDR67178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216823-1217513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 6823-1 21 751 3 bp Feature: gene Location: 1217972-1218354 bp Feature: gene Location: 1218505-1220331 bp Ori: QDR67179.1 Feature: domain Description: KAP_NTPase Location: 1218553-1218811 bp Feature: domain Description: KAP_NTPase Location: 1 21 8553-1 21 881 1 bp Feature: domain Description: KAP_NTPase Location: 1218886-1219135 bp Feature: domain Description: KAP_NTPase Location: 1 21 8886-1 21 91 35 bp Feature: gene Location: 2626068-2626619 bp Ori: QDR68344.1 Feature: domain Description: PinE Location: 2626308-2626524 bp Feature: domain Description: PinE Location: 2626308-2626524 bp Feature: gene Location: 2626899-2627882 bp Feature: domain Description: DUF4763 Location: 2626959-2627124 bp Feature: domain Description: DUF4763 Location: 2626959-26271 24 bp Feature: domain Description: COG3436 Location: 2627256-2627550 bp Feature: domain Description: COG3436 Location: 2627256-2627550 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2627565-2627883 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2627565-2627883 bp Feature: gene Location: 2628459-2630120 bp Ori: QDR68345.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2628504-2628747 bp Feature: domain Description: RVT_N Location: 2628504-2628747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628792-2629428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628792-2629428 bp Feature: domain Description: GIIM Note: maturase Location: 2629485-2629713 bp Feature: domain Description: GIIM Note: maturase Location: 2629485-262971 3 bp Feature: gene Location: 2630225-2630446 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2630318-2630429 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 263031 8-2630429 bp Feature: gene Location: 2630482-2631285 bp Ori: QDR68346.1 Feature: domain Description: HDc Location: 2630683-2631058 bp Feature: domain Description: HDc Location: 2630683-2631 058 bp Feature: gene Location: 4767596-4767886 bp Feature: gene Location: 4768746-4768949 bp Feature: gene Location: 4768997-4770589 bp Ori: QDR70153.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769501-4770191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769501 -47701 91 bp Feature: gene Location: 4770897-4772432 bp Ori: QDR70154.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4771005-4771218 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4771 005-4771 21 8 bp Feature: domain Description: zf-IS66 Location: 4771248-4771371 bp Feature: domain Description: zf-IS66 Location: 4771 248-4771 371 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4771416-4772271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4771 41 6-4772271 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4772292-4772406 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4772292-4772406 bp Feature: gene Location: 4772451-4772807 bp Ori: QDR71031.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 4772478-4772772 bp Feature: domain Description: TnpB_IS66 Location: 4772478-4772772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, KAP_NTPase (pfam07693), PinE (COG1961), DUF4763 (pfam15960), COG3436 (Transposase )
RVT_N (pfam13655), GIIM (pfam08388), HDc (smart00471)