myRT

myRT report for GCA_007747215.1_ASM774721v1

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Seq: CP036273.1 Planctomycetes bacterium ETA_A1 chromosome, complete genome (7795793 bp)
Overview 1 RT 1: 997097-1005016 bp 2 RT 2: 1073035-1078516 bp 3 RT 3: 2069199-2076442 bp 4 RT 4: 4004676-4010897 bp 5 RT 5: 4615128-4625440 bp 6 RT 6: 4658425-4668737 bp 7 RT 7: 4996699-5003963 bp Neighborhood of RT #1 [997097, 1005141] DDE_Tnp_1_4 RVT-GII Sig-70_X6 DDE_3 Neighborhood of RT #2 [1073035, 1078516] ViaA PRK13531 RVT_N RVT-GII GIIM HNHc PRK13531 Neighborhood of RT #3 [2069199, 2076471] RVT_N RVT-GII PinE Zn_ribbon_recom RVT-GII GIIM HNHc Sig-70_gvs1 Neighborhood of RT #4 [4004676, 4010897] RVT-CRISPR-like Neighborhood of RT #5 [4615128, 4625637] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DDE_Tnp_IS66 Neighborhood of RT #6 [4658425, 4669669] STKc_PknB_like TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_12 COG3415 RVT-GII STKc_PknB_like WD40 WD40 WD40 WD40 WD40 Neighborhood of RT #7 [4996699, 5003963] PQQ_2 RVT-Retrons Feature: gene Location: 997097-998458 bp Ori: QDU18929.1 Feature: domain Description: DDE_Tnp_1_4 Location: 997133-998432 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 9971 33-998432 bp Feature: gene Location: 999541-1000410 bp Feature: gene Location: 1000667-1002478 bp Ori: QDU18931.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1001408-1002098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 408-1 002098 bp Feature: gene Location: 1002643-1003848 bp Ori: QDU18932.1 Feature: domain Description: Sig-70_X6 Location: 1002646-1002943 bp Feature: domain Description: Sig-70_X6 Location: 1 002646-1 002943 bp Feature: gene Location: 1004443-1005141 bp Ori: QDU18933.1 Feature: domain Description: DDE_3 Location: 1004566-1005016 bp Feature: domain Description: DDE_3 Location: 1 004566-1 00501 6 bp Feature: gene Location: 1073035-1074417 bp Ori: QDU18972.1 Feature: domain Description: ViaA Location: 1073326-1074370 bp Feature: domain Description: ViaA Location: 1 073326-1 074370 bp Feature: gene Location: 1074557-1075399 bp Ori: QDU18973.1 Gene: ravA_1 Feature: domain Description: PRK13531 Location: 1074626-1075229 bp Feature: domain Description: PRK1 3531 Location: 1 074626-1 075229 bp Feature: gene Location: 1075338-1077125 bp Ori: QDU18974.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 1075371-1075617 bp Feature: domain Description: RVT_N Location: 1 075371 -1 07561 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075659-1076331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 075659-1 076331 bp Feature: domain Description: GIIM Note: maturase Location: 1076430-1076664 bp Feature: domain Description: GIIM Note: maturase Location: 1 076430-1 076664 bp Feature: domain Description: HNHc Note: nucleases Location: 1076853-1077000 bp Feature: domain Description: HNHc Note: nucleases Location: 1 076853-1 077000 bp Feature: gene Location: 1077698-1078090 bp Ori: QDU18975.1 Gene: ravA_2 Feature: domain Description: PRK13531 Location: 1077764-1078064 bp Feature: domain Description: PRK1 3531 Location: 1 077764-1 078064 bp Feature: gene Location: 1078340-1078516 bp Feature: gene Location: 2069199-2069537 bp Feature: gene Location: 2069581-2069775 bp Feature: gene Location: 2070543-2071133 bp Ori: QDU19751.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 2070591-2070834 bp Feature: domain Description: RVT_N Location: 2070591 -2070834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2070885-2071122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2070885-2071 1 22 bp Feature: gene Location: 2071141-2073186 bp Ori: QDU19752.1 Feature: domain Description: PinE Location: 2071186-2071834 bp Feature: domain Description: PinE Location: 2071 1 86-2071 834 bp Feature: domain Description: Zn_ribbon_recom Location: 2072122-2072281 bp Feature: domain Description: Zn_ribbon_recom Location: 20721 22-2072281 bp Feature: gene Location: 2073582-2074718 bp Ori: QDU19753.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073603-2074017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073603-207401 7 bp Feature: domain Description: GIIM Note: maturase Location: 2074089-2074323 bp Feature: domain Description: GIIM Note: maturase Location: 2074089-2074323 bp Feature: domain Description: HNHc Note: nucleases Location: 2074524-2074686 bp Feature: domain Description: HNHc Note: nucleases Location: 2074524-2074686 bp Feature: gene Location: 2074828-2075460 bp Feature: gene Location: 2075953-2076471 bp Ori: QDU19755.1 Gene: cnrH_2 Feature: domain Description: Sig-70_gvs1 Location: 2075971-2076442 bp Feature: domain Description: Sig-70_gvs1 Location: 2075971 -2076442 bp Feature: gene Location: 4004676-4005509 bp Feature: gene Location: 4005621-4006322 bp Feature: gene Location: 4006528-4009524 bp Ori: QDU21377.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4008508-4009126 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4008508-40091 26 bp Feature: gene Location: 4009531-4010001 bp Feature: gene Location: 4010046-4010897 bp Feature: gene Location: 4615128-4621631 bp Ori: QDU21891.1 Feature: domain Description: WD40 Location: 4615644-4615899 bp Feature: domain Description: WD40 Location: 461 5644-461 5899 bp Feature: domain Description: WD40 Location: 4615959-4616193 bp Feature: domain Description: WD40 Location: 461 5959-461 61 93 bp Feature: domain Description: HEAT_2 Location: 4616337-4616493 bp Feature: domain Description: HEAT_2 Location: 461 6337-461 6493 bp Feature: domain Description: HEAT_2 Location: 4616547-4616862 bp Feature: domain Description: HEAT_2 Location: 461 6547-461 6862 bp Feature: domain Description: HEAT_2 Location: 4617108-4617339 bp Feature: domain Description: HEAT_2 Location: 461 71 08-461 7339 bp Feature: domain Description: HEAT_2 Location: 4617687-4617882 bp Feature: domain Description: HEAT_2 Location: 461 7687-461 7882 bp Feature: domain Description: HEAT_2 Location: 4618026-4618239 bp Feature: domain Description: HEAT_2 Location: 461 8026-461 8239 bp Feature: domain Description: HEAT_2 Location: 4619244-4619451 bp Feature: domain Description: HEAT_2 Location: 461 9244-461 9451 bp Feature: domain Description: HEAT_2 Location: 4619886-4620090 bp Feature: domain Description: HEAT_2 Location: 461 9886-4620090 bp Feature: domain Description: HEAT_2 Location: 4620279-4620525 bp Feature: domain Description: HEAT_2 Location: 4620279-4620525 bp Feature: domain Description: HEAT_2 Location: 4621110-4621317 bp Feature: domain Description: HEAT_2 Location: 4621 1 1 0-4621 31 7 bp Feature: domain Description: HEAT_2 Location: 4621428-4621602 bp Feature: domain Description: HEAT_2 Location: 4621 428-4621 602 bp Feature: gene Location: 4621628-4623475 bp Feature: gene Location: 4623512-4624798 bp Ori: QDU21893.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4623965-4624577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4623965-4624577 bp Feature: gene Location: 4624855-4624998 bp Feature: gene Location: 4625155-4625637 bp Ori: QDU21895.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4625164-4625440 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46251 64-4625440 bp Feature: gene Location: 4658425-4661433 bp Ori: QDU21927.1 Gene: prkC_18 Feature: domain Description: STKc_PknB_like Location: 4658428-4658785 bp Feature: domain Description: STKc_PknB_like Location: 4658428-4658785 bp Feature: domain Description: TPR_12 Location: 4659322-4659553 bp Feature: domain Description: TPR_1 2 Location: 4659322-4659553 bp Feature: domain Description: TPR_12 Location: 4659613-4659703 bp Feature: domain Description: TPR_1 2 Location: 465961 3-4659703 bp Feature: domain Description: TPR_12 Location: 4659742-4659982 bp Feature: domain Description: TPR_1 2 Location: 4659742-4659982 bp Feature: domain Description: TPR_10 Location: 4660045-4660135 bp Feature: domain Description: TPR_1 0 Location: 4660045-46601 35 bp Feature: domain Description: TPR_12 Location: 4660165-4660270 bp Feature: domain Description: TPR_1 2 Location: 46601 65-4660270 bp Feature: domain Description: TPR_12 Location: 4660312-4660558 bp Feature: domain Description: TPR_1 2 Location: 466031 2-4660558 bp Feature: domain Description: TPR_12 Location: 4660594-4660702 bp Feature: domain Description: TPR_1 2 Location: 4660594-4660702 bp Feature: domain Description: TPR_12 Location: 4660753-4660987 bp Feature: domain Description: TPR_1 2 Location: 4660753-4660987 bp Feature: gene Location: 4661508-4661978 bp Ori: QDU21928.1 Feature: domain Description: COG3415 Location: 4661577-4661922 bp Feature: domain Description: COG341 5 Location: 4661 577-4661 922 bp Feature: gene Location: 4662081-4663385 bp Ori: QDU21929.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4662315-4663005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466231 5-4663005 bp Feature: gene Location: 4663805-4664638 bp Feature: gene Location: 4664867-4669669 bp Ori: QDU21931.1 Gene: pknB_37 Feature: domain Description: STKc_PknB_like Location: 4665218-4666097 bp Feature: domain Description: STKc_PknB_like Location: 466521 8-4666097 bp Feature: domain Description: WD40 Location: 4666622-4667069 bp Feature: domain Description: WD40 Location: 4666622-4667069 bp Feature: domain Description: WD40 Location: 4667231-4667528 bp Feature: domain Description: WD40 Location: 4667231 -4667528 bp Feature: domain Description: WD40 Location: 4667534-4667639 bp Feature: domain Description: WD40 Location: 4667534-4667639 bp Feature: domain Description: WD40 Location: 4667648-4667762 bp Feature: domain Description: WD40 Location: 4667648-4667762 bp Feature: domain Description: WD40 Location: 4667936-4668737 bp Feature: domain Description: WD40 Location: 4667936-4668737 bp Feature: gene Location: 4996699-4997433 bp Feature: gene Location: 4997453-4998388 bp Ori: QDU22192.1 Feature: domain Description: PQQ_2 Location: 4997543-4998314 bp Feature: domain Description: PQQ_2 Location: 4997543-499831 4 bp Feature: gene Location: 4998388-4999860 bp Ori: QDU22193.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4999006-4999624 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4999006-4999624 bp Feature: gene Location: 5000237-5001940 bp Feature: gene Location: 5002317-5003963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, Sig-70_X6 (TIGR02999), DDE_3 (pfam13358), ViaA (COG2425), PRK13531 (regulatory ATPase RavA; Provisional), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), PinE (COG1961)
Zn_ribbon_recom (pfam13408), Sig-70_gvs1 (TIGR02989), RVT-CRISPR, WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, DDE_Tnp_IS66 (pfam03050), STKc_PknB_like (cd14014), TPR_12 (pfam13424), TPR_10 (pfam13374)
COG3415 (Transposase ), PQQ_2 (pfam13360)