myRT

myRT report for GCA_007747795.1_ASM774779v1

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Seq: CP036275.1 Planctomycetes bacterium Mal4 chromosome, complete genome (7744989 bp)
Overview 1 RT 1: 1076678-1082911 bp 2 RT 2: 2910821-2917133 bp 3 RT 3: 3411873-3423120 bp 4 RT 4: 4186482-4192301 bp 5 RT 5: 4433193-4439749 bp 6 RT 6: 4466993-4474781 bp 7 RT 7: 4755124-4771780 bp 8 RT 8: 4842995-4851440 bp 9 RT 9: 4904911-4912502 bp 10 RT 10: 6660231-6667388 bp 11 RT 11: 6790191-6797375 bp 12 RT 12: 7007446-7015032 bp Neighborhood of RT #1 [1076678, 1082911] mutL RVT-Retrons S2P-M50_SpoIVFB Neighborhood of RT #2 [2910821, 2917133] groES GroEL RVT-GII GIIM KOG1281 KOG1281 Neighborhood of RT #3 [3411873, 3423134] ISOPREN_C2_like RVT-GII GIIM FMN_bind FMN_bind Fer4_5 Fer4_5 DEAH_box_HrpA Neighborhood of RT #4 [4186482, 4192312] PRK11855 RVT-GII GIIM T3SC_I_like YmaB Neighborhood of RT #5 [4433193, 4439749] padR_acidobact RVT-GII GIIM PRK00772 Neighborhood of RT #6 [4466993, 4474781] ARS_like RVT-Retrons SWIM Neighborhood of RT #7 [4755124, 4771803] RND_mfp IAT_beta Beta_helix Beta_helix Beta_helix NIDO Beta_helix Beta_helix Beta_helix RVT-GII GIIM ARO8 Nth Neighborhood of RT #8 [4842995, 4851475] PRK14607 aceE RVT-GII GIIM RpoE STKc_PknB_like LRR_RI Neighborhood of RT #9 [4904911, 4912519] PRK11883 Dob10 Dob10 DUF3516 DUF3516 RVT-GII GIIM rpsI rplM Neighborhood of RT #10 [6660231, 6667388] N_methyl SBP_bac_10 RVT-GII GIIM DUF5118 DUF5117 DUF4953 Neighborhood of RT #11 [6790191, 6797375] RVT-GII GIIM TFIIA_alpha_beta_like Neighborhood of RT #12 [7007446, 7015085] RlmK HEAT_2 HEAT_2 HEAT RVT-GII GIIM N_methyl SBP_bac_10 Feature: gene Location: 1076678-1078627 bp Ori: QDU36551.1 Gene: mutL Feature: domain Description: mutL Location: 1076708-1078619 bp Feature: domain Description: mutL Location: 1 076708-1 07861 9 bp Feature: gene Location: 1078766-1079578 bp Feature: gene Location: 1079696-1081012 bp Ori: QDU36553.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1080158-1080779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0801 58-1 080779 bp Feature: gene Location: 1081367-1082053 bp Ori: QDU36554.1 Gene: spoIVFB Feature: domain Description: S2P-M50_SpoIVFB Location: 1081442-1082036 bp Feature: domain Description: S2P-M50_SpoIVFB Location: 1 081 442-1 082036 bp Feature: gene Location: 1082720-1082911 bp Feature: gene Location: 2910821-2911135 bp Ori: QDU37877.1 Gene: groS_1 Feature: domain Description: groES Location: 2910857-2911130 bp Feature: domain Description: groES Location: 291 0857-291 1 1 30 bp Feature: gene Location: 2911453-2913066 bp Ori: QDU37878.1 Gene: groL_1 Feature: domain Description: GroEL Location: 2911459-2913025 bp Feature: domain Description: GroEL Location: 291 1 459-291 3025 bp Feature: gene Location: 2913572-2914993 bp Ori: QDU37879.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2913941-2914556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 3941 -291 4556 bp Feature: domain Description: GIIM Note: maturase Location: 2914604-2914808 bp Feature: domain Description: GIIM Note: maturase Location: 291 4604-291 4808 bp Feature: gene Location: 2915275-2916816 bp Ori: QDU37880.1 Gene: sdcS_2 Feature: domain Description: KOG1281 Location: 2915320-2915764 bp Feature: domain Description: KOG1 281 Location: 291 5320-291 5764 bp Feature: domain Description: KOG1281 Location: 2915791-2916793 bp Feature: domain Description: KOG1 281 Location: 291 5791 -291 6793 bp Feature: gene Location: 2916951-2917133 bp Feature: gene Location: 3411873-3414107 bp Ori: QDU38254.1 Feature: domain Description: ISOPREN_C2_like Location: 3413073-3414030 bp Feature: domain Description: ISOPREN_C2_like Location: 341 3073-341 4030 bp Feature: gene Location: 3414508-3415290 bp Feature: gene Location: 3415769-3417190 bp Ori: QDU38256.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416138-3416753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 61 38-341 6753 bp Feature: domain Description: GIIM Note: maturase Location: 3416801-3417005 bp Feature: domain Description: GIIM Note: maturase Location: 341 6801 -341 7005 bp Feature: gene Location: 3417386-3419095 bp Ori: QDU38257.1 Gene: yccM Feature: domain Description: FMN_bind Location: 3417686-3417914 bp Feature: domain Description: FMN_bind Location: 341 7686-341 791 4 bp Feature: domain Description: FMN_bind Location: 3418115-3418367 bp Feature: domain Description: FMN_bind Location: 341 81 1 5-341 8367 bp Feature: domain Description: Fer4_5 Location: 3418634-3418754 bp Feature: domain Description: Fer4_5 Location: 341 8634-341 8754 bp Feature: domain Description: Fer4_5 Location: 3418898-3419006 bp Feature: domain Description: Fer4_5 Location: 341 8898-341 9006 bp Feature: gene Location: 3419142-3423134 bp Ori: QDU38258.1 Gene: hrpB Feature: domain Description: DEAH_box_HrpA Location: 3419250-3423120 bp Feature: domain Description: DEAH_box_HrpA Location: 341 9250-34231 20 bp Feature: gene Location: 4186482-4188212 bp Ori: QDU38847.1 Gene: aceF Feature: domain Description: PRK11855 Location: 4186485-4188198 bp Feature: domain Description: PRK1 1 855 Location: 41 86485-41 881 98 bp Feature: gene Location: 4188572-4188901 bp Feature: gene Location: 4189028-4190449 bp Ori: QDU38849.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4189397-4190012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 89397-41 9001 2 bp Feature: domain Description: GIIM Note: maturase Location: 4190060-4190264 bp Feature: domain Description: GIIM Note: maturase Location: 41 90060-41 90264 bp Feature: gene Location: 4190942-4191568 bp Ori: QDU38850.1 Feature: domain Description: T3SC_I_like Location: 4191074-4191413 bp Feature: domain Description: T3SC_I_like Location: 41 91 074-41 91 41 3 bp Feature: gene Location: 4191704-4192312 bp Ori: QDU38851.1 Feature: domain Description: YmaB Location: 4191731-4192301 bp Feature: domain Description: YmaB Location: 41 91 731 -41 92301 bp Feature: gene Location: 4433193-4433546 bp Ori: QDU39042.1 Feature: domain Description: padR_acidobact Location: 4433223-4433511 bp Feature: domain Description: padR_acidobact Location: 4433223-443351 1 bp Feature: gene Location: 4433607-4435604 bp Feature: gene Location: 4436097-4437518 bp Ori: QDU39044.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436466-4437081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436466-4437081 bp Feature: domain Description: GIIM Note: maturase Location: 4437129-4437333 bp Feature: domain Description: GIIM Note: maturase Location: 44371 29-4437333 bp Feature: gene Location: 4438089-4439171 bp Ori: QDU39045.1 Gene: leuB Feature: domain Description: PRK00772 Location: 4438098-4439166 bp Feature: domain Description: PRK00772 Location: 4438098-44391 66 bp Feature: gene Location: 4439498-4439749 bp Feature: gene Location: 4466993-4467619 bp Feature: gene Location: 4467995-4469596 bp Ori: QDU39072.1 Gene: atsA_43 Feature: domain Description: ARS_like Location: 4468076-4469420 bp Feature: domain Description: ARS_like Location: 4468076-4469420 bp Feature: gene Location: 4469701-4471128 bp Ori: QDU39073.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4470310-4470922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 447031 0-4470922 bp Feature: gene Location: 4471372-4472904 bp Ori: QDU39074.1 Feature: domain Description: SWIM Location: 4472761-4472854 bp Feature: domain Description: SWIM Location: 4472761 -4472854 bp Feature: gene Location: 4472904-4474781 bp Feature: gene Location: 4755124-4757292 bp Ori: QDU39265.1 Feature: domain Description: RND_mfp Location: 4756495-4757224 bp Feature: domain Description: RND_mfp Location: 4756495-4757224 bp Feature: gene Location: 4757600-4767676 bp Ori: QDU39266.1 Feature: domain Description: IAT_beta Location: 4757852-4758239 bp Feature: domain Description: IAT_beta Location: 4757852-4758239 bp Feature: domain Description: Beta_helix Location: 4761347-4761851 bp Feature: domain Description: Beta_helix Location: 4761 347-4761 851 bp Feature: domain Description: Beta_helix Location: 4763171-4763366 bp Feature: domain Description: Beta_helix Location: 47631 71 -4763366 bp Feature: domain Description: Beta_helix Location: 4763777-4764278 bp Feature: domain Description: Beta_helix Location: 4763777-4764278 bp Feature: domain Description: NIDO Location: 4764671-4764950 bp Feature: domain Description: NIDO Location: 4764671 -4764950 bp Feature: domain Description: Beta_helix Location: 4764992-4765205 bp Feature: domain Description: Beta_helix Location: 4764992-4765205 bp Feature: domain Description: Beta_helix Location: 4765226-4765718 bp Feature: domain Description: Beta_helix Location: 4765226-476571 8 bp Feature: domain Description: Beta_helix Location: 4766144-4766657 bp Feature: domain Description: Beta_helix Location: 47661 44-4766657 bp Feature: gene Location: 4768157-4769578 bp Ori: QDU39267.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4768526-4769141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4768526-47691 41 bp Feature: domain Description: GIIM Note: maturase Location: 4769189-4769393 bp Feature: domain Description: GIIM Note: maturase Location: 47691 89-4769393 bp Feature: gene Location: 4769703-4771004 bp Ori: QDU39268.1 Gene: lysN Feature: domain Description: ARO8 Location: 4769787-4770987 bp Feature: domain Description: ARO8 Location: 4769787-4770987 bp Feature: gene Location: 4771141-4771803 bp Ori: QDU39269.1 Gene: pdg Feature: domain Description: Nth Location: 4771168-4771780 bp Feature: domain Description: Nth Location: 4771 1 68-4771 780 bp Feature: gene Location: 4842995-4843597 bp Ori: QDU39325.1 Gene: pabA Feature: domain Description: PRK14607 Location: 4842998-4843574 bp Feature: domain Description: PRK1 4607 Location: 4842998-4843574 bp Feature: gene Location: 4843989-4846688 bp Ori: QDU39326.1 Gene: aceE Feature: domain Description: aceE Location: 4844022-4846680 bp Feature: domain Description: aceE Location: 4844022-4846680 bp Feature: gene Location: 4847172-4848593 bp Ori: QDU39327.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847541-4848156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847541 -48481 56 bp Feature: domain Description: GIIM Note: maturase Location: 4848204-4848408 bp Feature: domain Description: GIIM Note: maturase Location: 4848204-4848408 bp Feature: gene Location: 4848794-4849393 bp Ori: QDU39328.1 Gene: cnrH_2 Feature: domain Description: RpoE Location: 4848839-4849385 bp Feature: domain Description: RpoE Location: 4848839-4849385 bp Feature: gene Location: 4849400-4851475 bp Ori: QDU39329.1 Gene: prkC_16 Feature: domain Description: STKc_PknB_like Location: 4849724-4850495 bp Feature: domain Description: STKc_PknB_like Location: 4849724-4850495 bp Feature: domain Description: LRR_RI Location: 4850891-4851440 bp Feature: domain Description: LRR_RI Location: 4850891 -4851 440 bp Feature: gene Location: 4904911-4906410 bp Ori: QDU39372.1 Gene: hemY Feature: domain Description: PRK11883 Location: 4904965-4906369 bp Feature: domain Description: PRK1 1 883 Location: 4904965-4906369 bp Feature: gene Location: 4906460-4909132 bp Ori: QDU39373.1 Gene: mfd_1 Feature: domain Description: Dob10 Location: 4906526-4907114 bp Feature: domain Description: Dob1 0 Location: 4906526-49071 1 4 bp Feature: domain Description: Dob10 Location: 4907162-4907627 bp Feature: domain Description: Dob1 0 Location: 49071 62-4907627 bp Feature: domain Description: DUF3516 Location: 4907699-4907978 bp Feature: domain Description: DUF351 6 Location: 4907699-4907978 bp Feature: domain Description: DUF3516 Location: 4908641-4908950 bp Feature: domain Description: DUF351 6 Location: 4908641 -4908950 bp Feature: gene Location: 4909343-4910764 bp Ori: QDU39374.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4909712-4910327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490971 2-491 0327 bp Feature: domain Description: GIIM Note: maturase Location: 4910375-4910579 bp Feature: domain Description: GIIM Note: maturase Location: 491 0375-491 0579 bp Feature: gene Location: 4911246-4911965 bp Ori: QDU39375.1 Gene: rpsI Feature: domain Description: rpsI Location: 4911591-4911963 bp Feature: domain Description: rpsI Location: 491 1 591 -491 1 963 bp Feature: gene Location: 4912001-4912519 bp Ori: QDU39376.1 Gene: rplM Feature: domain Description: rplM Location: 4912052-4912502 bp Feature: domain Description: rplM Location: 491 2052-491 2502 bp Feature: gene Location: 6660231-6661283 bp Ori: QDU40710.1 Feature: domain Description: N_methyl Location: 6660252-6660324 bp Feature: domain Description: N_methyl Location: 6660252-6660324 bp Feature: domain Description: SBP_bac_10 Location: 6660336-6661143 bp Feature: domain Description: SBP_bac_1 0 Location: 6660336-6661 1 43 bp Feature: gene Location: 6661273-6661914 bp Feature: gene Location: 6662105-6663526 bp Ori: QDU40712.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6662474-6663089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6662474-6663089 bp Feature: domain Description: GIIM Note: maturase Location: 6663137-6663341 bp Feature: domain Description: GIIM Note: maturase Location: 66631 37-6663341 bp Feature: gene Location: 6664005-6666611 bp Ori: QDU40713.1 Feature: domain Description: DUF5118 Location: 6664092-6664233 bp Feature: domain Description: DUF51 1 8 Location: 6664092-6664233 bp Feature: domain Description: DUF5117 Location: 6664290-6664827 bp Feature: domain Description: DUF51 1 7 Location: 6664290-6664827 bp Feature: domain Description: DUF4953 Location: 6665358-6666312 bp Feature: domain Description: DUF4953 Location: 6665358-666631 2 bp Feature: gene Location: 6666627-6667388 bp Feature: gene Location: 6790191-6790445 bp Feature: gene Location: 6790695-6791819 bp Feature: gene Location: 6792012-6793433 bp Ori: QDU40814.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6792381-6792996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6792381 -6792996 bp Feature: domain Description: GIIM Note: maturase Location: 6793044-6793248 bp Feature: domain Description: GIIM Note: maturase Location: 6793044-6793248 bp Feature: gene Location: 6793914-6795746 bp Ori: QDU40815.1 Feature: domain Description: TFIIA_alpha_beta_like Location: 6794043-6794352 bp Feature: domain Description: TFIIA_alpha_beta_like Location: 6794043-6794352 bp Feature: gene Location: 6796191-6797375 bp Feature: gene Location: 7007446-7008714 bp Ori: QDU40985.1 Gene: rlmI_2 Feature: domain Description: RlmK Location: 7007593-7008709 bp Feature: domain Description: RlmK Location: 7007593-7008709 bp Feature: gene Location: 7009619-7010674 bp Ori: QDU40986.1 Feature: domain Description: HEAT_2 Location: 7009955-7010168 bp Feature: domain Description: HEAT_2 Location: 7009955-701 01 68 bp Feature: domain Description: HEAT_2 Location: 7010204-7010435 bp Feature: domain Description: HEAT_2 Location: 701 0204-701 0435 bp Feature: domain Description: HEAT Location: 7010507-7010588 bp Feature: domain Description: HEAT Location: 701 0507-701 0588 bp Feature: gene Location: 7011304-7012725 bp Ori: QDU40987.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7011673-7012288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 1 673-701 2288 bp Feature: domain Description: GIIM Note: maturase Location: 7012336-7012540 bp Feature: domain Description: GIIM Note: maturase Location: 701 2336-701 2540 bp Feature: gene Location: 7013502-7014047 bp Feature: gene Location: 7014117-7015085 bp Ori: QDU40989.1 Gene: pulG Feature: domain Description: N_methyl Location: 7014120-7014198 bp Feature: domain Description: N_methyl Location: 701 41 20-701 41 98 bp Feature: domain Description: SBP_bac_10 Location: 7014210-7015032 bp Feature: domain Description: SBP_bac_1 0 Location: 701 421 0-701 5032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutL (PRK00095), RVT-Retrons, S2P-M50_SpoIVFB (cd06161), groES (PRK14533), GroEL (TIGR02348), RVT-GII, GIIM (pfam08388), KOG1281 (KOG1281, Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters ), ISOPREN_C2_like (cl08267), FMN_bind (smart00900)
Fer4_5 (pfam12801), DEAH_box_HrpA (TIGR01967), PRK11855 (dihydrolipoamide acetyltransferase; Reviewed), T3SC_I_like, YmaB (COG4112), padR_acidobact (TIGR03433), PRK00772 (3-isopropylmalate dehydrogenase; Provisional), ARS_like (cd16146), SWIM (pfam04434), RND_mfp (TIGR01730)
IAT_beta (pfam11924), Beta_helix (pfam13229), NIDO (smart00539), ARO8 (COG1167), Nth (COG0177), PRK14607 (bifunctional anthranilate synthase component II/anthranilate phosphoribosyltransferase), aceE (TIGR00759), RpoE (COG3343), STKc_PknB_like (cd14014), LRR_RI (smart00368)
PRK11883 (protoporphyrinogen oxidase; Reviewed), Dob10 (COG4581), DUF3516 (pfam12029), rpsI (PRK00132), rplM (PRK09216), N_methyl (pfam07963), SBP_bac_10 (pfam07596), DUF5118 (pfam17162), DUF5117 (pfam17148), DUF4953 (pfam16313)
TFIIA_alpha_beta_like (cl21683), RlmK (COG1092), HEAT_2 (pfam13646), HEAT (sd00044)