myRT

myRT report for GCA_007748035.1_ASM774803v1

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Seq: CP036278.1 Planctomycetes bacterium Pan181 chromosome, complete genome (6608792 bp)
Overview 1 RT 1: 1191301-1197782 bp 2 RT 2: 1856720-1862385 bp 3 RT 3: 5567004-5575321 bp 4 RT 4: 6395218-6399769 bp Neighborhood of RT #1 [1191301, 1197871] ALP_like ALP_like Ntn_CGH RVT-GII GIIM YadS BBP7 Neighborhood of RT #2 [1856720, 1862408] DUF3419 UbiE RVT-Retrons Glyco_trans_1_3 CE4_NodB_like_2 Neighborhood of RT #3 [5567004, 5575341] RVT-Retrons Laminin_G_3 ExbD Neighborhood of RT #4 [6395218, 6399789] HTH_XRE RVT-Retrons ClpP FrmB FrmB Feature: gene Location: 1191301-1192374 bp Ori: QDU54840.1 Gene: gpmI Feature: domain Description: ALP_like Location: 1191508-1191727 bp Feature: domain Description: ALP_like Location: 1 1 91 508-1 1 91 727 bp Feature: domain Description: ALP_like Location: 1191898-1192264 bp Feature: domain Description: ALP_like Location: 1 1 91 898-1 1 92264 bp Feature: gene Location: 1192886-1193947 bp Ori: QDU54841.1 Feature: domain Description: Ntn_CGH Location: 1192889-1193753 bp Feature: domain Description: Ntn_CGH Location: 1 1 92889-1 1 93753 bp Feature: gene Location: 1194309-1195784 bp Ori: QDU54842.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194672-1195290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 94672-1 1 95290 bp Feature: domain Description: GIIM Note: maturase Location: 1195353-1195566 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 95353-1 1 95566 bp Feature: gene Location: 1195980-1196633 bp Ori: QDU54843.1 Feature: domain Description: YadS Location: 1196016-1196583 bp Feature: domain Description: YadS Location: 1 1 9601 6-1 1 96583 bp Feature: gene Location: 1196855-1197871 bp Ori: QDU54844.1 Feature: domain Description: BBP7 Location: 1197317-1197782 bp Feature: domain Description: BBP7 Location: 1 1 9731 7-1 1 97782 bp Feature: gene Location: 1856720-1858003 bp Ori: QDU55360.1 Feature: domain Description: DUF3419 Location: 1856753-1857902 bp Feature: domain Description: DUF341 9 Location: 1 856753-1 857902 bp Feature: gene Location: 1857942-1858673 bp Ori: QDU55361.1 Gene: ubiE_2 Feature: domain Description: UbiE Location: 1858011-1858515 bp Feature: domain Description: UbiE Location: 1 85801 1 -1 85851 5 bp Feature: gene Location: 1858679-1860058 bp Ori: QDU55362.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1859189-1859816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8591 89-1 85981 6 bp Feature: gene Location: 1860396-1861478 bp Ori: QDU55363.1 Feature: domain Description: Glyco_trans_1_3 Location: 1860405-1861374 bp Feature: domain Description: Glyco_trans_1 _3 Location: 1 860405-1 861 374 bp Feature: gene Location: 1861503-1862408 bp Ori: QDU55364.1 Gene: pgdA_1 Feature: domain Description: CE4_NodB_like_2 Location: 1861827-1862385 bp Feature: domain Description: CE4_NodB_like_2 Location: 1 861 827-1 862385 bp Feature: gene Location: 5567004-5568779 bp Feature: gene Location: 5568776-5570485 bp Feature: gene Location: 5570778-5572403 bp Ori: QDU58349.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5571561-5572176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5571 561 -55721 76 bp Feature: gene Location: 5572434-5574959 bp Ori: QDU58350.1 Feature: domain Description: Laminin_G_3 Location: 5573277-5573565 bp Feature: domain Description: Laminin_G_3 Location: 5573277-5573565 bp Feature: gene Location: 5574964-5575341 bp Ori: QDU58351.1 Feature: domain Description: ExbD Location: 5574970-5575321 bp Feature: domain Description: ExbD Location: 5574970-5575321 bp Feature: gene Location: 6395218-6395502 bp Feature: gene Location: 6395564-6395941 bp Ori: QDU59005.1 Feature: domain Description: HTH_XRE Location: 6395582-6395750 bp Feature: domain Description: HTH_XRE Location: 6395582-6395750 bp Feature: gene Location: 6395883-6396980 bp Ori: QDU59006.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6396018-6396534 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 639601 8-6396534 bp Feature: gene Location: 6397259-6398764 bp Ori: QDU59007.1 Gene: clpP_3 Feature: domain Description: ClpP Location: 6398027-6398540 bp Feature: domain Description: ClpP Location: 6398027-6398540 bp Feature: gene Location: 6399013-6399789 bp Ori: QDU59008.1 Feature: domain Description: FrmB Location: 6399187-6399460 bp Feature: domain Description: FrmB Location: 63991 87-6399460 bp Feature: domain Description: FrmB Location: 6399616-6399769 bp Feature: domain Description: FrmB Location: 639961 6-6399769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALP_like (cl23718), Ntn_CGH (cd01902), RVT-GII, GIIM (pfam08388), YadS (COG2860), BBP7 (pfam07585), DUF3419 (pfam11899), UbiE (COG2226), RVT-Retrons, Glyco_trans_1_3 (pfam13528)
CE4_NodB_like_2 (cd10958), Laminin_G_3 (pfam13385), ExbD (pfam02472), HTH_XRE (smart00530), ClpP (COG0740), FrmB (COG0627)