myRT

myRT report for GCA_007748055.1_ASM774805v1

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Seq: CP036279.1 Planctomycetes bacterium Pan216 chromosome, complete genome (7613473 bp)
Overview 1 RT 1: 2791223-2796635 bp 2 RT 2: 3311854-3317502 bp 3 RT 3: 4776318-4782676 bp 4 RT 4: 6789154-6793681 bp Neighborhood of RT #1 [2791223, 2796808] COG3795 RVT-GII PRK07431 SGSH Neighborhood of RT #2 [3311854, 3317564] groEL FRG RVT-Retrons LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #3 [4776318, 4782676] RpoD CsrA RVT-Retrons Neighborhood of RT #4 [6789154, 6793737] PduO HisC RVT-GII GIIM TadA SRAP Feature: gene Location: 2791223-2791618 bp Ori: QDU61328.1 Feature: domain Description: COG3795 Location: 2791226-2791568 bp Feature: domain Description: COG3795 Location: 2791 226-2791 568 bp Feature: gene Location: 2791790-2792005 bp Feature: gene Location: 2792106-2792996 bp Ori: QDU61330.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2792145-2792640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27921 45-2792640 bp Feature: gene Location: 2793479-2795284 bp Ori: QDU61331.1 Gene: lysC Feature: domain Description: PRK07431 Location: 2793485-2795273 bp Feature: domain Description: PRK07431 Location: 2793485-2795273 bp Feature: gene Location: 2795333-2796808 bp Ori: QDU61332.1 Gene: betC_5 Feature: domain Description: SGSH Location: 2795444-2796635 bp Feature: domain Description: SGSH Location: 2795444-2796635 bp Feature: gene Location: 3311854-3313473 bp Ori: QDU61689.1 Gene: groL_2 Feature: domain Description: groEL Location: 3311863-3313465 bp Feature: domain Description: groEL Location: 331 1 863-331 3465 bp Feature: gene Location: 3313433-3314470 bp Ori: QDU61690.1 Feature: domain Description: FRG Location: 3313760-3314054 bp Feature: domain Description: FRG Location: 331 3760-331 4054 bp Feature: gene Location: 3314527-3315024 bp Ori: QDU61691.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3314533-3314662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 331 4533-331 4662 bp Feature: gene Location: 3315107-3316813 bp Ori: QDU61692.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3315296-3315527 bp Feature: domain Description: LZ_Tnp_IS66 Location: 331 5296-331 5527 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3315740-3316559 bp Feature: domain Description: DDE_Tnp_IS66 Location: 331 5740-331 6559 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3316580-3316688 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 331 6580-331 6688 bp Feature: gene Location: 3317172-3317564 bp Ori: QDU61693.1 Feature: domain Description: TnpB_IS66 Location: 3317199-3317502 bp Feature: domain Description: TnpB_IS66 Location: 331 71 99-331 7502 bp Feature: gene Location: 4776318-4777160 bp Ori: QDU62817.1 Gene: rpoS Feature: domain Description: RpoD Location: 4776354-4777137 bp Feature: domain Description: RpoD Location: 4776354-47771 37 bp Feature: gene Location: 4777390-4777581 bp Ori: QDU62818.1 Gene: csrA_6 Feature: domain Description: CsrA Location: 4777393-4777540 bp Feature: domain Description: CsrA Location: 4777393-4777540 bp Feature: gene Location: 4777733-4778992 bp Ori: QDU62819.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4778177-4778777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47781 77-4778777 bp Feature: gene Location: 4779177-4780808 bp Feature: gene Location: 4780805-4782676 bp Feature: gene Location: 6789154-6789744 bp Ori: QDU64329.1 Feature: domain Description: PduO Location: 6789160-6789712 bp Feature: domain Description: PduO Location: 67891 60-678971 2 bp Feature: gene Location: 6789777-6790811 bp Ori: QDU64330.1 Gene: hisC Feature: domain Description: HisC Location: 6789792-6790806 bp Feature: domain Description: HisC Location: 6789792-6790806 bp Feature: gene Location: 6791093-6792187 bp Ori: QDU64331.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6791348-6791858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6791 348-6791 858 bp Feature: domain Description: GIIM Note: maturase Location: 6791900-6792101 bp Feature: domain Description: GIIM Note: maturase Location: 6791 900-67921 01 bp Feature: gene Location: 6792411-6792848 bp Ori: QDU64332.1 Gene: tadA_2 Feature: domain Description: TadA Location: 6792420-6792744 bp Feature: domain Description: TadA Location: 6792420-6792744 bp Feature: gene Location: 6792955-6793737 bp Ori: QDU64333.1 Gene: yedK_2 Feature: domain Description: SRAP Location: 6793051-6793681 bp Feature: domain Description: SRAP Location: 6793051 -6793681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3795 (Uncharacterized conserved protein ), RVT-GII, PRK07431 (aspartate kinase; Provisional), SGSH (cd16027), groEL (PRK12852), FRG (smart00901), RVT-Retrons, LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
TnpB_IS66 (pfam05717), RpoD (COG0568), CsrA (pfam02599), PduO (COG2096), HisC (COG0079), GIIM (pfam08388), TadA (COG0590), SRAP (pfam02586)