myRT

myRT report for GCA_007752135.1_ASM775213v1

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Seq: CP036298.1 Planctomycetes bacterium Q31a chromosome, complete genome (8439957 bp)
Overview 1 RT 1: 1098363-1104912 bp 2 RT 2: 2421941-2425531 bp 3 RT 3: 2744640-2749300 bp 4 RT 4: 3936092-3941211 bp 5 RT 5: 4710020-4721614 bp 6 RT 6: 5436649-5441819 bp 7 RT 7: 5570618-5575681 bp 8 RT 8: 6510765-6520311 bp 9 RT 9: 6872336-6876790 bp 10 RT 10: 7395845-7402463 bp Neighborhood of RT #1 [1098363, 1105289] RVT-UG4 Sig-70_plancto1 Dockerin_1 Dockerin_1 Neighborhood of RT #2 [2421941, 2425531] RVT-GII Neighborhood of RT #3 [2744640, 2749300] Planc_Planc_Planc_TIGR03067 RVT-GII Neighborhood of RT #4 [3936092, 3941249] RVT-GII GIIM Response_reg Neighborhood of RT #5 [4710020, 4721614] Phage_int_SAM_1 INT_P4_C dnaG RVT-UG10 RVT-UG10 Neighborhood of RT #6 [5436649, 5441923] YfeS RVT-GII sialate_O-acetylesterase_like1 ARS_like SASA Neighborhood of RT #7 [5570618, 5575681] HEAT_2 HEAT_2 HEAT_2 RVT-GII TPR Neighborhood of RT #8 [6510765, 6520311] Secretin_N type_II_gspD type_II_gspD PulD Secretin_N type_II_gspD COG3666 DDE_Tnp_1_6 RVT-GII GIIM Neighborhood of RT #9 [6872336, 6876790] RVT-GII GIIM Neighborhood of RT #10 [7395845, 7403716] RVT-Retrons COG0610 pfam13191 Feature: gene Location: 1098363-1098533 bp Feature: gene Location: 1098598-1099245 bp Feature: gene Location: 1099338-1100183 bp Ori: QDV22544.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1099692-1100115 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 099692-1 1 001 1 5 bp Feature: gene Location: 1100730-1101041 bp Ori: QDV22545.1 Feature: domain Description: Sig-70_plancto1 Location: 1100796-1100994 bp Feature: domain Description: Sig-70_plancto1 Location: 1 1 00796-1 1 00994 bp Feature: gene Location: 1101129-1105289 bp Ori: QDV22546.1 Feature: domain Description: Dockerin_1 Location: 1104684-1104753 bp Feature: domain Description: Dockerin_1 Location: 1 1 04684-1 1 04753 bp Feature: domain Description: Dockerin_1 Location: 1104798-1104912 bp Feature: domain Description: Dockerin_1 Location: 1 1 04798-1 1 0491 2 bp Feature: gene Location: 2421941-2422096 bp Feature: gene Location: 2422096-2422683 bp Feature: gene Location: 2422954-2424600 bp Ori: QDV23601.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2423521-2424214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2423521 -242421 4 bp Feature: gene Location: 2424713-2425327 bp Feature: gene Location: 2425376-2425531 bp Feature: gene Location: 2744640-2745263 bp Ori: QDV23841.1 Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 2744829-2745132 bp Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 2744829-27451 32 bp Feature: gene Location: 2745386-2745736 bp Feature: gene Location: 2746131-2747633 bp Ori: QDV23843.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746572-2747259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746572-2747259 bp Feature: gene Location: 2747911-2748552 bp Feature: gene Location: 2748515-2749300 bp Feature: gene Location: 3936092-3936439 bp Feature: gene Location: 3936311-3937471 bp Feature: gene Location: 3938109-3939293 bp Ori: QDV24748.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3938349-3938952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3938349-3938952 bp Feature: domain Description: GIIM Note: maturase Location: 3938994-3939231 bp Feature: domain Description: GIIM Note: maturase Location: 3938994-3939231 bp Feature: gene Location: 3940137-3940601 bp Feature: gene Location: 3940848-3941249 bp Ori: QDV24750.1 Gene: hupR1 Feature: domain Description: Response_reg Location: 3940884-3941211 bp Feature: domain Description: Response_reg Location: 3940884-3941 21 1 bp Feature: gene Location: 4710020-4710211 bp Feature: gene Location: 4710318-4711367 bp Ori: QDV25291.1 Feature: domain Description: Phage_int_SAM_1 Location: 4710375-4710579 bp Feature: domain Description: Phage_int_SAM_1 Location: 471 0375-471 0579 bp Feature: domain Description: INT_P4_C Location: 4710918-4711245 bp Feature: domain Description: INT_P4_C Location: 471 091 8-471 1 245 bp Feature: gene Location: 4711937-4719517 bp Ori: QDV25292.1 Gene: dnaG_2 Feature: domain Description: dnaG Location: 4712018-4713143 bp Feature: domain Description: dnaG Location: 471 201 8-471 31 43 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 4713815-4714070 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 471 381 5-471 4070 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 4714238-4714475 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 471 4238-471 4475 bp Feature: gene Location: 4720489-4720725 bp Feature: gene Location: 4721243-4721614 bp Feature: gene Location: 5436649-5437179 bp Feature: gene Location: 5437320-5437757 bp Ori: QDV25800.1 Feature: domain Description: YfeS Location: 5437347-5437467 bp Feature: domain Description: YfeS Location: 5437347-5437467 bp Feature: gene Location: 5438487-5439047 bp Ori: QDV25801.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5438493-5438691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5438493-5438691 bp Feature: gene Location: 5439090-5441285 bp Ori: QDV25802.1 Gene: atsA_50 Feature: domain Description: sialate_O-acetylesterase_like1 Location: 5439192-5439795 bp Feature: domain Description: sialate_O-acetylesterase_like1 Location: 54391 92-5439795 bp Feature: domain Description: ARS_like Location: 5439816-5441187 bp Feature: domain Description: ARS_like Location: 543981 6-5441 1 87 bp Feature: gene Location: 5441483-5441923 bp Ori: QDV25803.1 Feature: domain Description: SASA Location: 5441507-5441819 bp Feature: domain Description: SASA Location: 5441 507-5441 81 9 bp Feature: gene Location: 5570618-5571016 bp Feature: gene Location: 5571157-5572503 bp Ori: QDV25934.1 Feature: domain Description: HEAT_2 Location: 5571499-5571661 bp Feature: domain Description: HEAT_2 Location: 5571 499-5571 661 bp Feature: domain Description: HEAT_2 Location: 5571847-5572084 bp Feature: domain Description: HEAT_2 Location: 5571 847-5572084 bp Feature: domain Description: HEAT_2 Location: 5572126-5572327 bp Feature: domain Description: HEAT_2 Location: 55721 26-5572327 bp Feature: gene Location: 5572782-5574428 bp Ori: QDV25935.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5573349-5574042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5573349-5574042 bp Feature: gene Location: 5574695-5575276 bp Ori: QDV25936.1 Feature: domain Description: TPR Location: 5574941-5575226 bp Feature: domain Description: TPR Location: 5574941 -5575226 bp Feature: gene Location: 5575322-5575681 bp Feature: gene Location: 6510765-6514355 bp Ori: QDV26649.1 Gene: gspD Feature: domain Description: Secretin_N Location: 6511056-6511158 bp Feature: domain Description: Secretin_N Location: 651 1 056-651 1 1 58 bp Feature: domain Description: type_II_gspD Location: 6511224-6511638 bp Feature: domain Description: type_II_gspD Location: 651 1 224-651 1 638 bp Feature: domain Description: type_II_gspD Location: 6511680-6512091 bp Feature: domain Description: type_II_gspD Location: 651 1 680-651 2091 bp Feature: domain Description: PulD Location: 6512118-6512241 bp Feature: domain Description: PulD Location: 651 21 1 8-651 2241 bp Feature: domain Description: Secretin_N Location: 6512259-6512541 bp Feature: domain Description: Secretin_N Location: 651 2259-651 2541 bp Feature: domain Description: type_II_gspD Location: 6512553-6513945 bp Feature: domain Description: type_II_gspD Location: 651 2553-651 3945 bp Feature: gene Location: 6515224-6516447 bp Ori: QDV26650.1 Feature: domain Description: COG3666 Location: 6515236-6515665 bp Feature: domain Description: COG3666 Location: 651 5236-651 5665 bp Feature: domain Description: DDE_Tnp_1_6 Location: 6516226-6516421 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 651 6226-651 6421 bp Feature: gene Location: 6517437-6518621 bp Ori: QDV26651.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6517677-6518280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 7677-651 8280 bp Feature: domain Description: GIIM Note: maturase Location: 6518322-6518559 bp Feature: domain Description: GIIM Note: maturase Location: 651 8322-651 8559 bp Feature: gene Location: 6518618-6518890 bp Feature: gene Location: 6519121-6520311 bp Feature: gene Location: 6872336-6872668 bp Feature: gene Location: 6872999-6873199 bp Feature: gene Location: 6874710-6875132 bp Ori: QDV26975.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6874716-6874794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687471 6-6874794 bp Feature: domain Description: GIIM Note: maturase Location: 6874833-6875070 bp Feature: domain Description: GIIM Note: maturase Location: 6874833-6875070 bp Feature: gene Location: 6875719-6876414 bp Feature: gene Location: 6876521-6876790 bp Feature: gene Location: 7395845-7396042 bp Feature: gene Location: 7396032-7397414 bp Feature: gene Location: 7397426-7398622 bp Ori: QDV27372.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7397651-7398338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7397651 -7398338 bp Feature: gene Location: 7398612-7401581 bp Ori: QDV27373.1 Gene: hsdR_2 Feature: domain Description: COG0610 Location: 7398627-7401303 bp Feature: domain Description: COG061 0 Location: 7398627-7401 303 bp Feature: gene Location: 7401596-7403716 bp Ori: QDV27374.1 Feature: domain Description: pfam13191 Location: 7401734-7402463 bp Feature: domain Description: pfam1 31 91 Location: 7401 734-7402463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, Sig-70_plancto1 (TIGR02984), Dockerin_1 (pfam00404), RVT-GII, Planc_Planc_Planc_TIGR03067, GIIM (pfam08388), Response_reg (pfam00072), Phage_int_SAM_1 (pfam02899), INT_P4_C (cd00801), dnaG (TIGR01391)
RVT-UG10, YfeS (COG4884), sialate_O-acetylesterase_like1 (cd01827), ARS_like (cd16146), SASA (pfam03629), HEAT_2 (pfam13646), TPR (smart00028), Secretin_N (pfam03958), type_II_gspD (TIGR02517), PulD (COG1450)
COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), pfam13191 (AAA_16;AAA ATPase domain)