myRT

myRT report for GCA_007833295.1_ASM783329v1

Download annotations/find similar RTs

Seq: CP042248.1 Escherichia coli strain BCE049 plasmid pBCE049-2, complete sequence (102714 bp)
Overview 1 RT 1: 23745-27315 bp 2 RT 2: 34704-38410 bp Neighborhood of RT #1 [23745, 27315] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Neighborhood of RT #2 [34704, 38415] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 23745-24041 bp Feature: gene Location: 24068-24282 bp Feature: gene Location: 24304-26028 bp Ori: QDX42018.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24361-24598 bp Feature: domain Description: RVT_N Location: 24361 -24598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24649-25297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24649-25297 bp Feature: domain Description: YkfC Location: 25429-25585 bp Feature: domain Description: YkfC Location: 25429-25585 bp Feature: domain Description: HNHc Note: nucleases Location: 25813-25972 bp Feature: domain Description: HNHc Note: nucleases Location: 2581 3-25972 bp Feature: gene Location: 26105-27007 bp Ori: QDX42019.1 Feature: domain Description: DUF1281 Location: 26174-26702 bp Feature: domain Description: DUF1 281 Location: 261 74-26702 bp Feature: domain Description: DUF1281_C Location: 26708-26948 bp Feature: domain Description: DUF1 281 _C Location: 26708-26948 bp Feature: gene Location: 27011-27315 bp Feature: gene Location: 34704-34910 bp Feature: gene Location: 34897-34974 bp Feature: gene Location: 35588-37489 bp Ori: QDX42033.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35855-36686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35855-36686 bp Feature: domain Description: Intron_maturas2 Location: 36800-37058 bp Feature: domain Description: Intron_maturas2 Location: 36800-37058 bp Feature: domain Description: HNHc Note: nucleases Location: 37232-37394 bp Feature: domain Description: HNHc Note: nucleases Location: 37232-37394 bp Feature: gene Location: 37639-38124 bp Ori: QDX42034.1 Feature: domain Description: PRK13732 Location: 37642-38122 bp Feature: domain Description: PRK1 3732 Location: 37642-381 22 bp Feature: gene Location: 38182-38415 bp Ori: QDX42035.1 Feature: domain Description: DUF905 Location: 38212-38410 bp Feature: domain Description: DUF905 Location: 3821 2-3841 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP042247.1 Escherichia coli strain BCE049 plasmid pBCE049-1, complete sequence (142705 bp)
Overview 1 RT 1: 43918-47230 bp 2 RT 2: 111075-115361 bp 3 RT 3: 119080-122650 bp Neighborhood of RT #1 [43918, 47229] PHA02517 RVT-GII InsE PHA02517 Neighborhood of RT #2 [111075, 115361] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [119080, 122650] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 43918-44379 bp Feature: domain Description: PHA02517 Location: 43921-44368 bp Feature: domain Description: PHA02 517 Location: 4392 1-44368 bp Feature: gene Location: 44460-44918 bp Feature: gene Location: 45031-45846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45340-45748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45340-45748 bp Feature: gene Location: 46157-46526 bp Feature: gene Location: 46522-47229 bp Feature: domain Description: InsE Location: 46564-46801 bp Feature: domain Description: InsE Location: 46564-46801 bp Feature: domain Description: PHA02517 Location: 46912-47230 bp Feature: domain Description: PHA02 517 Location: 46912 -472 30 bp Feature: gene Location: 111075-111308 bp Ori: QDX41958.1 Feature: domain Description: DUF905 Location: 111105-111303 bp Feature: domain Description: DUF905 Location: 111105-111303 bp Feature: gene Location: 111371-111868 bp Ori: QDX41959.1 Feature: domain Description: PRK13732 Location: 111374-111866 bp Feature: domain Description: PRK13732 Location: 111374-111866 bp Feature: gene Location: 112018-113919 bp Ori: QDX41960.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112285-113116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 2 85-113116 bp Feature: domain Description: Intron_maturas2 Location: 113230-113488 bp Feature: domain Description: Intron_maturas2 Location: 1132 30-113488 bp Feature: domain Description: HNHc Note: nucleases Location: 113662-113824 bp Feature: domain Description: HNHc Note: nucleases Location: 113662 -11382 4 bp Feature: gene Location: 114568-114774 bp Feature: gene Location: 115263-115361 bp Feature: gene Location: 119080-119384 bp Feature: gene Location: 119388-120290 bp Ori: QDX41968.1 Feature: domain Description: DUF1281 Location: 119457-119985 bp Feature: domain Description: DUF12 81 Location: 119457-119985 bp Feature: domain Description: DUF1281_C Location: 119991-120231 bp Feature: domain Description: DUF12 81_C Location: 119991-12 02 31 bp Feature: gene Location: 120367-122091 bp Ori: QDX41969.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120424-120661 bp Feature: domain Description: RVT_N Location: 12 042 4-12 0661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120712-121360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0712 -12 1360 bp Feature: domain Description: YkfC Location: 121492-121648 bp Feature: domain Description: YkfC Location: 12 1492 -12 1648 bp Feature: domain Description: HNHc Note: nucleases Location: 121876-122035 bp Feature: domain Description: HNHc Note: nucleases Location: 12 1876-12 2 035 bp Feature: gene Location: 122113-122327 bp Feature: gene Location: 122354-122650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, InsE (COG2963), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655)
YkfC (COG3344)

Seq: CP042250.1 Escherichia coli strain BCE049 chromosome, complete genome (5084081 bp)
Overview 1 RT 1: 2880670-2885636 bp Neighborhood of RT #1 [2880670, 2885636] PRK10306 Arm-DNA-bind_3 INT_P4_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 2880670-2881320 bp Ori: QDX44822.1 Gene: zinT Feature: domain Description: PRK10306 Location: 2880676-2881318 bp Feature: domain Description: PRK103 06 Location: 2880676-28813 18 bp Feature: gene Location: 2882168-2883280 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2882234-2882468 bp Feature: domain Description: Arm-DNA-bind_3 Location: 288223 4-2882468 bp Feature: domain Description: INT_P4_C Location: 2882864-2883278 bp Feature: domain Description: INT_P4_C Location: 2882864-2883 278 bp Feature: gene Location: 2883353-2885077 bp Ori: QDX44823.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2883410-2883647 bp Feature: domain Description: RVT_N Location: 2883 410-2883 647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2883698-2884346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2883 698-28843 46 bp Feature: domain Description: YkfC Location: 2884478-2884634 bp Feature: domain Description: YkfC Location: 2884478-288463 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2884862-2885021 bp Feature: domain Description: HNHc Note: nucleases Location: 2884862-2885021 bp Feature: gene Location: 2885099-2885313 bp Feature: gene Location: 2885340-2885636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10306 (zinc/cadmium-binding protein; Provisional), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)