myRT

myRT report for GCA_007904085.1_ASM790408v1

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Seq: CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome (3326959 bp)
Overview 1 RT 1: 313537-319379 bp 2 RT 2: 713564-717674 bp 3 RT 3: 936780-941739 bp 4 RT 4: 1037603-1043215 bp 5 RT 5: 1862501-1871789 bp 6 RT 6: 1948177-1955361 bp 7 RT 7: 2238756-2243550 bp 8 RT 8: 2261917-2267835 bp 9 RT 9: 2436751-2442756 bp 10 RT 10: 2611610-2618814 bp 11 RT 11: 3089228-3105075 bp Neighborhood of RT #1 [313537, 319450] gnd InsQ RVT_N RVT-GII GIIM HNHc tspaseT_teng_N Acetyltransf_1 Neighborhood of RT #2 [713564, 717679] DDE_Tnp_1_2 RVT-GII ZntA COG4633 Neighborhood of RT #3 [936780, 941747] RVT-UG7 GstA YnbB Neighborhood of RT #4 [1037603, 1043292] PRK13654 InsQ RVT_N RVT-GII GIIM McrA arc_metj Neighborhood of RT #5 [1862501, 1871803] YdiL DUF3326 RVT_N RVT-GII GIIM HNHc DnaK sbcc Neighborhood of RT #6 [1948177, 1955366] PRK14143 PRK13411 RVT_N RVT-GII GIIM HNHc PRK14293 SirA_YedF_YeeD Neighborhood of RT #7 [2238756, 2243600] RVT_N RVT-GII GIIM HNHc RHH_1 PcnB Neighborhood of RT #8 [2261917, 2267849] RibE COG5421 RVT-GII GIIM HNHc psbZ GlpX Neighborhood of RT #9 [2436751, 2442773] PepSY_TM PepSY_TM YfgC RVT_N RVT-GII GIIM HNHc InsQ PCP_red Neighborhood of RT #10 [2611610, 2618814] UPF0175 InsQ RVT_N RVT-GII HTH_32 COG5659 RVT-GII GIIM HNH InsQ Neighborhood of RT #11 [3089228, 3105098] DUF3488 YebA DUF4129 XylB RVT_N RVT-GII GIIM McrA PRK06354 DUF2811 TPR_19 dnd_restrict_1 RVT_N RVT-GII GIIM HNH dnd_restrict_1 SH3b AmiC Feature: gene Location: 313537-314970 bp Ori: QDZ38716.1 Gene: gnd Feature: domain Description: gnd Location: 313555-314953 bp Feature: domain Description: gnd Location: 31 3555-31 4953 bp Feature: gene Location: 315170-316105 bp Feature: domain Description: InsQ Location: 315248-315935 bp Feature: domain Description: InsQ Location: 31 5248-31 5935 bp Feature: gene Location: 316181-317857 bp Ori: QDZ38717.1 Gene: ltrA Feature: domain Description: RVT_N Location: 316232-316475 bp Feature: domain Description: RVT_N Location: 31 6232-31 6475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316517-317150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 651 7-31 71 50 bp Feature: domain Description: GIIM Note: maturase Location: 317207-317435 bp Feature: domain Description: GIIM Note: maturase Location: 31 7207-31 7435 bp Feature: domain Description: HNHc Note: nucleases Location: 317678-317819 bp Feature: domain Description: HNHc Note: nucleases Location: 31 7678-31 781 9 bp Feature: gene Location: 318474-318875 bp Feature: domain Description: tspaseT_teng_N Location: 318492-318705 bp Feature: domain Description: tspaseT_teng_N Location: 31 8492-31 8705 bp Feature: gene Location: 319016-319450 bp Ori: QDZ38718.1 Feature: domain Description: Acetyltransf_1 Location: 319049-319379 bp Feature: domain Description: Acetyltransf_1 Location: 31 9049-31 9379 bp Feature: gene Location: 713564-713707 bp Feature: gene Location: 713921-714223 bp Ori: QDZ39046.1 Feature: domain Description: DDE_Tnp_1_2 Location: 714050-714200 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 71 4050-71 4200 bp Feature: gene Location: 714179-714553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714182-714512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 41 82-71 451 2 bp Feature: gene Location: 715087-717366 bp Ori: QDZ39047.1 Feature: domain Description: ZntA Location: 715114-717355 bp Feature: domain Description: ZntA Location: 71 51 1 4-71 7355 bp Feature: gene Location: 717581-717679 bp Feature: domain Description: COG4633 Location: 717584-717674 bp Feature: domain Description: COG4633 Location: 71 7584-71 7674 bp Feature: gene Location: 936780-937466 bp Feature: gene Location: 937484-937924 bp Feature: gene Location: 938264-939808 bp Ori: QDZ39234.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 938642-939062 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 938642-939062 bp Feature: gene Location: 939895-940521 bp Ori: QDZ39235.1 Feature: domain Description: GstA Location: 939907-940498 bp Feature: domain Description: GstA Location: 939907-940498 bp Feature: gene Location: 940518-941747 bp Ori: QDZ39236.1 Feature: domain Description: YnbB Location: 940533-941739 bp Feature: domain Description: YnbB Location: 940533-941 739 bp Feature: gene Location: 1037603-1038658 bp Ori: QDZ39323.1 Gene: acsF Feature: domain Description: PRK13654 Location: 1037621-1038641 bp Feature: domain Description: PRK1 3654 Location: 1 037621 -1 038641 bp Feature: gene Location: 1039154-1040278 bp Ori: QDZ39324.1 Feature: domain Description: InsQ Location: 1039169-1040243 bp Feature: domain Description: InsQ Location: 1 0391 69-1 040243 bp Feature: gene Location: 1040954-1042744 bp Ori: QDZ39325.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1040987-1041233 bp Feature: domain Description: RVT_N Location: 1 040987-1 041 233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041275-1041968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 275-1 041 968 bp Feature: domain Description: GIIM Note: maturase Location: 1042070-1042301 bp Feature: domain Description: GIIM Note: maturase Location: 1 042070-1 042301 bp Feature: domain Description: McrA Location: 1042394-1042673 bp Feature: domain Description: McrA Location: 1 042394-1 042673 bp Feature: gene Location: 1042843-1042977 bp Feature: gene Location: 1043095-1043292 bp Ori: QDZ39326.1 Feature: domain Description: arc_metj Location: 1043098-1043215 bp Feature: domain Description: arc_metj Location: 1 043098-1 04321 5 bp Feature: gene Location: 1862501-1863076 bp Ori: QDZ40054.1 Feature: domain Description: YdiL Location: 1862558-1863059 bp Feature: domain Description: YdiL Location: 1 862558-1 863059 bp Feature: gene Location: 1863089-1864144 bp Ori: QDZ40055.1 Feature: domain Description: DUF3326 Location: 1863110-1864112 bp Feature: domain Description: DUF3326 Location: 1 8631 1 0-1 8641 1 2 bp Feature: gene Location: 1865255-1866967 bp Ori: QDZ40056.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1865303-1865549 bp Feature: domain Description: RVT_N Location: 1 865303-1 865549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1865597-1866281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 865597-1 866281 bp Feature: domain Description: GIIM Note: maturase Location: 1866353-1866587 bp Feature: domain Description: GIIM Note: maturase Location: 1 866353-1 866587 bp Feature: domain Description: HNHc Note: nucleases Location: 1866797-1866959 bp Feature: domain Description: HNHc Note: nucleases Location: 1 866797-1 866959 bp Feature: gene Location: 1867109-1868716 bp Ori: QDZ40057.1 Feature: domain Description: DnaK Location: 1867133-1868681 bp Feature: domain Description: DnaK Location: 1 8671 33-1 868681 bp Feature: gene Location: 1868786-1871803 bp Ori: QDZ40058.1 Gene: sbcC Feature: domain Description: sbcc Location: 1868789-1871789 bp Feature: domain Description: sbcc Location: 1 868789-1 871 789 bp Feature: gene Location: 1948177-1948944 bp Ori: QDZ40147.1 Gene: grpE Feature: domain Description: PRK14143 Location: 1948225-1948915 bp Feature: domain Description: PRK1 41 43 Location: 1 948225-1 94891 5 bp Feature: gene Location: 1949060-1951243 bp Ori: QDZ40148.1 Gene: dnaK Feature: domain Description: PRK13411 Location: 1949063-1951052 bp Feature: domain Description: PRK1 341 1 Location: 1 949063-1 951 052 bp Feature: gene Location: 1952045-1953760 bp Ori: QDZ40149.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1952093-1952339 bp Feature: domain Description: RVT_N Location: 1 952093-1 952339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952387-1953074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 952387-1 953074 bp Feature: domain Description: GIIM Note: maturase Location: 1953146-1953380 bp Feature: domain Description: GIIM Note: maturase Location: 1 9531 46-1 953380 bp Feature: domain Description: HNHc Note: nucleases Location: 1953593-1953752 bp Feature: domain Description: HNHc Note: nucleases Location: 1 953593-1 953752 bp Feature: gene Location: 1953973-1955112 bp Ori: QDZ40150.1 Gene: dnaJ Feature: domain Description: PRK14293 Location: 1953976-1955107 bp Feature: domain Description: PRK1 4293 Location: 1 953976-1 9551 07 bp Feature: gene Location: 1955109-1955366 bp Ori: QDZ40151.1 Feature: domain Description: SirA_YedF_YeeD Location: 1955160-1955361 bp Feature: domain Description: SirA_YedF_YeeD Location: 1 9551 60-1 955361 bp Feature: gene Location: 2238756-2239022 bp Feature: gene Location: 2239176-2239520 bp Feature: gene Location: 2239598-2241265 bp Ori: QDZ40419.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2239649-2239892 bp Feature: domain Description: RVT_N Location: 2239649-2239892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2239934-2240558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2239934-2240558 bp Feature: domain Description: GIIM Note: maturase Location: 2240615-2240843 bp Feature: domain Description: GIIM Note: maturase Location: 224061 5-2240843 bp Feature: domain Description: HNHc Note: nucleases Location: 2241086-2241227 bp Feature: domain Description: HNHc Note: nucleases Location: 2241 086-2241 227 bp Feature: gene Location: 2241997-2242131 bp Ori: QDZ40420.1 Feature: domain Description: RHH_1 Location: 2242015-2242117 bp Feature: domain Description: RHH_1 Location: 224201 5-22421 1 7 bp Feature: gene Location: 2242365-2243600 bp Ori: QDZ40421.1 Feature: domain Description: PcnB Location: 2242422-2243550 bp Feature: domain Description: PcnB Location: 2242422-2243550 bp Feature: gene Location: 2261917-2262486 bp Ori: QDZ40438.1 Feature: domain Description: RibE Location: 2261920-2262385 bp Feature: domain Description: RibE Location: 2261 920-2262385 bp Feature: gene Location: 2263456-2265087 bp Ori: QDZ40439.1 Feature: domain Description: COG5421 Location: 2263501-2264983 bp Feature: domain Description: COG5421 Location: 2263501 -2264983 bp Feature: gene Location: 2265296-2266138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265302-2265431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265302-2265431 bp Feature: domain Description: GIIM Note: maturase Location: 2265488-2265716 bp Feature: domain Description: GIIM Note: maturase Location: 2265488-226571 6 bp Feature: domain Description: HNHc Note: nucleases Location: 2265959-2266100 bp Feature: domain Description: HNHc Note: nucleases Location: 2265959-22661 00 bp Feature: gene Location: 2266459-2266647 bp Ori: QDZ40440.1 Gene: psbZ Feature: domain Description: psbZ Location: 2266462-2266645 bp Feature: domain Description: psbZ Location: 2266462-2266645 bp Feature: gene Location: 2266809-2267849 bp Ori: QDZ40441.1 Gene: glpX Feature: domain Description: GlpX Location: 2266818-2267835 bp Feature: domain Description: GlpX Location: 226681 8-2267835 bp Feature: gene Location: 2436751-2437065 bp Ori: QDZ40607.1 Feature: domain Description: PepSY_TM Location: 2436760-2436850 bp Feature: domain Description: PepSY_TM Location: 2436760-2436850 bp Feature: domain Description: PepSY_TM Location: 2436889-2437003 bp Feature: domain Description: PepSY_TM Location: 2436889-2437003 bp Feature: gene Location: 2437204-2438055 bp Ori: QDZ40608.1 Feature: domain Description: YfgC Location: 2437276-2438047 bp Feature: domain Description: YfgC Location: 2437276-2438047 bp Feature: gene Location: 2439605-2441275 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2439656-2439899 bp Feature: domain Description: RVT_N Location: 2439656-2439899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2439941-2440568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2439941 -2440568 bp Feature: domain Description: GIIM Note: maturase Location: 2440625-2440853 bp Feature: domain Description: GIIM Note: maturase Location: 2440625-2440853 bp Feature: domain Description: HNHc Note: nucleases Location: 2441093-2441237 bp Feature: domain Description: HNHc Note: nucleases Location: 2441 093-2441 237 bp Feature: gene Location: 2441292-2442578 bp Ori: QDZ40609.1 Feature: domain Description: InsQ Location: 2441340-2442513 bp Feature: domain Description: InsQ Location: 2441 340-244251 3 bp Feature: gene Location: 2442585-2442773 bp Ori: QDZ40610.1 Feature: domain Description: PCP_red Location: 2442624-2442756 bp Feature: domain Description: PCP_red Location: 2442624-2442756 bp Feature: gene Location: 2611610-2611864 bp Ori: QDZ40758.1 Feature: domain Description: UPF0175 Location: 2611634-2611853 bp Feature: domain Description: UPF01 75 Location: 261 1 634-261 1 853 bp Feature: gene Location: 2612093-2613103 bp Ori: QDZ40759.1 Feature: domain Description: InsQ Location: 2612102-2612924 bp Feature: domain Description: InsQ Location: 261 21 02-261 2924 bp Feature: gene Location: 2613537-2614488 bp Feature: domain Description: RVT_N Location: 2613630-2613876 bp Feature: domain Description: RVT_N Location: 261 3630-261 3876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613918-2614350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 391 8-261 4350 bp Feature: gene Location: 2614501-2615570 bp Feature: domain Description: HTH_32 Location: 2614678-2614894 bp Feature: domain Description: HTH_32 Location: 261 4678-261 4894 bp Feature: gene Location: 2615711-2617030 bp Ori: QDZ41532.1 Feature: domain Description: COG5659 Location: 2615774-2616767 bp Feature: domain Description: COG5659 Location: 261 5774-261 6767 bp Feature: gene Location: 2617090-2617923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617099-2617216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 7099-261 721 6 bp Feature: domain Description: GIIM Note: maturase Location: 2617306-2617537 bp Feature: domain Description: GIIM Note: maturase Location: 261 7306-261 7537 bp Feature: domain Description: HNH Note: nucleases Location: 2617759-2617891 bp Feature: domain Description: HNH Note: nucleases Location: 261 7759-261 7891 bp Feature: gene Location: 2618024-2618404 bp Feature: domain Description: InsQ Location: 2618027-2618366 bp Feature: domain Description: InsQ Location: 261 8027-261 8366 bp Feature: gene Location: 2618611-2618814 bp Feature: gene Location: 3089228-3091540 bp Ori: QDZ41178.1 Feature: domain Description: DUF3488 Location: 3089363-3089933 bp Feature: domain Description: DUF3488 Location: 3089363-3089933 bp Feature: domain Description: YebA Location: 3090122-3091109 bp Feature: domain Description: YebA Location: 30901 22-3091 1 09 bp Feature: domain Description: DUF4129 Location: 3091307-3091502 bp Feature: domain Description: DUF41 29 Location: 3091 307-3091 502 bp Feature: gene Location: 3091746-3092990 bp Ori: QDZ41179.1 Feature: domain Description: XylB Location: 3091752-3092976 bp Feature: domain Description: XylB Location: 3091 752-3092976 bp Feature: gene Location: 3093727-3095517 bp Ori: QDZ41180.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3093760-3094006 bp Feature: domain Description: RVT_N Location: 3093760-3094006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3094048-3094741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3094048-3094741 bp Feature: domain Description: GIIM Note: maturase Location: 3094843-3095074 bp Feature: domain Description: GIIM Note: maturase Location: 3094843-3095074 bp Feature: domain Description: McrA Location: 3095167-3095446 bp Feature: domain Description: McrA Location: 30951 67-3095446 bp Feature: gene Location: 3095678-3097483 bp Ori: QDZ41181.1 Gene: pyk Feature: domain Description: PRK06354 Location: 3095681-3097424 bp Feature: domain Description: PRK06354 Location: 3095681 -3097424 bp Feature: gene Location: 3097651-3097866 bp Ori: QDZ41182.1 Feature: domain Description: DUF2811 Location: 3097669-3097861 bp Feature: domain Description: DUF281 1 Location: 3097669-3097861 bp Feature: gene Location: 3098193-3099263 bp Ori: QDZ41554.1 Feature: domain Description: TPR_19 Location: 3098217-3098385 bp Feature: domain Description: TPR_1 9 Location: 309821 7-3098385 bp Feature: gene Location: 3099272-3100405 bp Ori: QDZ41183.1 Feature: domain Description: dnd_restrict_1 Location: 3099410-3100388 bp Feature: domain Description: dnd_restrict_1 Location: 309941 0-31 00388 bp Feature: gene Location: 3101098-3102891 bp Ori: QDZ41184.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3101131-3101377 bp Feature: domain Description: RVT_N Location: 31 01 1 31 -31 01 377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3101419-3102112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 01 41 9-31 021 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 3102211-3102445 bp Feature: domain Description: GIIM Note: maturase Location: 31 0221 1 -31 02445 bp Feature: domain Description: HNH Note: nucleases Location: 3102676-3102808 bp Feature: domain Description: HNH Note: nucleases Location: 31 02676-31 02808 bp Feature: gene Location: 3102991-3103338 bp Feature: domain Description: dnd_restrict_1 Location: 3102994-3103330 bp Feature: domain Description: dnd_restrict_1 Location: 31 02994-31 03330 bp Feature: gene Location: 3103323-3105098 bp Ori: QDZ41185.1 Feature: domain Description: SH3b Location: 3104034-3104178 bp Feature: domain Description: SH3b Location: 31 04034-31 041 78 bp Feature: domain Description: AmiC Location: 3104376-3105075 bp Feature: domain Description: AmiC Location: 31 04376-31 05075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gnd (TIGR00873), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), tspaseT_teng_N (TIGR01765), Acetyltransf_1 (pfam00583), DDE_Tnp_1_2 (pfam13586), ZntA (COG2217)
COG4633 (Plastocyanin domain containing protein ), RVT-UG7, GstA (COG0625), YnbB (COG4589), PRK13654 (magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional), McrA (COG4058), arc_metj (LOAD_arc_metj), YdiL (COG1266), DUF3326 (pfam11805), DnaK (COG0443)
sbcc (TIGR00618), PRK14143 (heat shock protein GrpE; Provisional), PRK13411 (molecular chaperone DnaK; Provisional), PRK14293 (molecular chaperone DnaJ), SirA_YedF_YeeD (cl00436), RHH_1 (pfam01402), PcnB (COG0617), RibE (COG0054), COG5421 (Transposase ), psbZ (PRK02576)
GlpX (COG1494), PepSY_TM (pfam03929), YfgC (COG4783), PCP_red (pfam08369), UPF0175 (pfam03683), HTH_32 (pfam13565), COG5659 (SRSO17 transposase ), HNH (pfam01844), DUF3488 (pfam11992), YebA (COG1305)
DUF4129 (pfam13559), XylB (TIGR01312), PRK06354 (pyruvate kinase; Provisional), DUF2811 (pfam10929), TPR_19 (pfam14559), dnd_restrict_1 (TIGR04095), SH3b (smart00287), AmiC (COG0860)