myRT

myRT report for GCA_007917035.1_ASM791703v1

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Seq: CP041261.1 Enterococcus faecium strain VVEswe-R chromosome, complete genome (2851560 bp)
Overview 1 RT 1: 1831280-1837352 bp 2 RT 2: 2726176-2730979 bp Neighborhood of RT #1 [1831280, 1837354] AAA_10 RVT-GII DDE_Tnp_1_3 AAA_10 Neighborhood of RT #2 [2726176, 2730993] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 1831280-1832119 bp Feature: domain Description: AAA_10 Location: 1831286-1832105 bp Feature: domain Description: AAA_1 0 Location: 1 831 286-1 8321 05 bp Feature: gene Location: 1832123-1832209 bp Feature: gene Location: 1832232-1834058 bp Ori: QDZ51100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832532-1833231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832532-1 833231 bp Feature: gene Location: 1834456-1835364 bp Ori: QDZ51101.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1834810-1835227 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 83481 0-1 835227 bp Feature: gene Location: 1835852-1837354 bp Feature: domain Description: AAA_10 Location: 1837181-1837352 bp Feature: domain Description: AAA_1 0 Location: 1 8371 81 -1 837352 bp Feature: gene Location: 2726176-2727360 bp Ori: QDZ51896.1 Feature: domain Description: HTH_XRE Location: 2726206-2726350 bp Feature: domain Description: HTH_XRE Location: 2726206-2726350 bp Feature: domain Description: Rol_Rep_N Location: 2726383-2726647 bp Feature: domain Description: Rol_Rep_N Location: 2726383-2726647 bp Feature: domain Description: Rep_trans Location: 2726671-2727283 bp Feature: domain Description: Rep_trans Location: 2726671 -2727283 bp Feature: gene Location: 2727357-2727494 bp Ori: QDZ51897.1 Feature: domain Description: DUF3789 Location: 2727384-2727477 bp Feature: domain Description: DUF3789 Location: 2727384-2727477 bp Feature: gene Location: 2728239-2730149 bp Ori: QDZ51898.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728572-2729310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728572-272931 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2729865-2730030 bp Feature: domain Description: HNHc Note: nucleases Location: 2729865-2730030 bp Feature: gene Location: 2730253-2730477 bp Feature: gene Location: 2730490-2730993 bp Ori: QDZ51899.1 Feature: domain Description: ArdA Location: 2730508-2730979 bp Feature: domain Description: ArdA Location: 2730508-2730979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, DDE_Tnp_1_3 (pfam13612), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275)

Seq: CP041264.1 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R3, complete sequence (65253 bp)
Overview 1 RT 1: 49811-55121 bp Neighborhood of RT #1 [49811, 55121] PinE RVT-GII PolY_Pol_V_umuC Feature: gene Location: 49811-50395 bp Ori: QDZ52417.1 Feature: domain Description: PinE Location: 49817-50378 bp Feature: domain Description: PinE Location: 49817-50378 bp Feature: gene Location: 51199-51424 bp Feature: gene Location: 51539-53401 bp Ori: QDZ52418.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51848-52586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51848-52 586 bp Feature: gene Location: 53483-54778 bp Ori: QDZ52419.1 Feature: domain Description: PolY_Pol_V_umuC Location: 53522-54557 bp Feature: domain Description: PolY_Pol_V_umuC Location: 5352 2 -54557 bp Feature: gene Location: 54771-55121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PolY_Pol_V_umuC (cd01700)

Seq: CP041263.1 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R2 (89846 bp)
Overview 1 RT 1: 6595-13023 bp Neighborhood of RT #1 [6595, 13023] PolY_Pol_V_umuC RVT-GII Feature: gene Location: 6595-6942 bp Feature: gene Location: 6935-8230 bp Ori: QDZ52275.1 Feature: domain Description: PolY_Pol_V_umuC Location: 6974-8009 bp Feature: domain Description: PolY_Pol_V_umuC Location: 6974-8009 bp Feature: gene Location: 8312-10174 bp Ori: QDZ52276.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8621-9359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8621-93 59 bp Feature: gene Location: 10289-10514 bp Feature: gene Location: 11797-13023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII