myRT

myRT report for GCA_007917035.3_ASM791703v3

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Seq: CP041261.3 Enterococcus faecium strain VVEswe-R chromosome, complete genome (2851579 bp)
Overview 1 RT 1: 1830009-1837361 bp 2 RT 2: 2726194-2730997 bp Neighborhood of RT #1 [1830009, 1837363] Transposase_mut AAA_10 RVT-GII DDE_Tnp_1_3 AAA_10 Neighborhood of RT #2 [2726194, 2731011] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 1830009-1831196 bp Ori: QDZ51099.1 Feature: domain Description: Transposase_mut Location: 1830012-1831155 bp Feature: domain Description: Transposase_mut Location: 1 83001 2-1 831 1 55 bp Feature: gene Location: 1831289-1832107 bp Ori: QJQ72073.1 Feature: domain Description: AAA_10 Location: 1831292-1832093 bp Feature: domain Description: AAA_1 0 Location: 1 831 292-1 832093 bp Feature: gene Location: 1832241-1834067 bp Ori: QDZ51100.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832541-1833240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832541 -1 833240 bp Feature: gene Location: 1834465-1835373 bp Ori: QDZ51101.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1834819-1835236 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 83481 9-1 835236 bp Feature: gene Location: 1835861-1837363 bp Feature: domain Description: AAA_10 Location: 1837190-1837361 bp Feature: domain Description: AAA_1 0 Location: 1 8371 90-1 837361 bp Feature: gene Location: 2726194-2727378 bp Ori: QDZ51896.1 Feature: domain Description: HTH_XRE Location: 2726224-2726368 bp Feature: domain Description: HTH_XRE Location: 2726224-2726368 bp Feature: domain Description: Rol_Rep_N Location: 2726401-2726665 bp Feature: domain Description: Rol_Rep_N Location: 2726401 -2726665 bp Feature: domain Description: Rep_trans Location: 2726689-2727301 bp Feature: domain Description: Rep_trans Location: 2726689-2727301 bp Feature: gene Location: 2727393-2727512 bp Ori: QDZ51897.2 Feature: domain Description: DUF3789 Location: 2727402-2727495 bp Feature: domain Description: DUF3789 Location: 2727402-2727495 bp Feature: gene Location: 2728257-2730167 bp Ori: QDZ51898.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728590-2729328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728590-2729328 bp Feature: domain Description: HNHc Note: nucleases Location: 2729883-2730048 bp Feature: domain Description: HNHc Note: nucleases Location: 2729883-2730048 bp Feature: gene Location: 2730271-2730495 bp Feature: gene Location: 2730508-2731011 bp Ori: QDZ51899.1 Feature: domain Description: ArdA Location: 2730526-2730997 bp Feature: domain Description: ArdA Location: 2730526-2730997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), AAA_10 (pfam12846), RVT-GII, DDE_Tnp_1_3 (pfam13612), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275)

Seq: CP041264.2 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R3, complete sequence (65253 bp)
Overview 1 RT 1: 49397-55122 bp Neighborhood of RT #1 [49397, 55122] PinE RVT-GII PolY_Pol_V_umuC Feature: gene Location: 49397-49600 bp Feature: gene Location: 49812-50396 bp Ori: QDZ52417.1 Feature: domain Description: PinE Location: 49818-50379 bp Feature: domain Description: PinE Location: 49818-50379 bp Feature: gene Location: 51540-53402 bp Ori: QDZ52418.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51849-52587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51849-52 587 bp Feature: gene Location: 53484-54779 bp Ori: QDZ52419.1 Feature: domain Description: PolY_Pol_V_umuC Location: 53523-54558 bp Feature: domain Description: PolY_Pol_V_umuC Location: 5352 3-54558 bp Feature: gene Location: 54772-55122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PolY_Pol_V_umuC (cd01700)

Seq: CP041263.2 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R2 (89846 bp)
Overview 1 RT 1: 6596-13358 bp Neighborhood of RT #1 [6596, 13358] PolY_Pol_V_umuC RVT-GII Feature: gene Location: 6596-6943 bp Feature: gene Location: 6936-8231 bp Ori: QDZ52275.1 Feature: domain Description: PolY_Pol_V_umuC Location: 6975-8010 bp Feature: domain Description: PolY_Pol_V_umuC Location: 6975-8010 bp Feature: gene Location: 8313-10175 bp Ori: QDZ52276.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-9360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-93 60 bp Feature: gene Location: 11798-13024 bp Feature: gene Location: 13158-13358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII