myRT

myRT report for GCA_007917315.2_ASM791731v2

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Seq: CP041273.1 Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S3, complete sequence (65253 bp)
Overview 1 RT 1: 49396-55121 bp Neighborhood of RT #1 [49396, 55121] PinE RVT-GII PolY_Pol_V_umuC Feature: gene Location: 49396-49599 bp Feature: gene Location: 49811-50395 bp Ori: QDZ49297.1 Feature: domain Description: PinE Location: 49817-50378 bp Feature: domain Description: PinE Location: 4981 7-50378 bp Feature: gene Location: 51539-53401 bp Ori: QDZ49298.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51848-52586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 848-52586 bp Feature: gene Location: 53483-54778 bp Ori: QDZ49299.1 Feature: domain Description: PolY_Pol_V_umuC Location: 53522-54557 bp Feature: domain Description: PolY_Pol_V_umuC Location: 53522-54557 bp Feature: gene Location: 54771-55121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PolY_Pol_V_umuC (cd01700)

Seq: CP041272.1 Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S2 (89798 bp)
Overview 1 RT 1: 76444-83206 bp Neighborhood of RT #1 [76444, 83206] RVT-GII PolY_Pol_V_umuC Feature: gene Location: 76444-76644 bp Feature: gene Location: 76778-78004 bp Feature: gene Location: 79627-81489 bp Ori: QDZ49229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79936-80674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79936-80674 bp Feature: gene Location: 81571-82866 bp Ori: QDZ49230.1 Feature: domain Description: PolY_Pol_V_umuC Location: 81610-82645 bp Feature: domain Description: PolY_Pol_V_umuC Location: 81610-82 645 bp Feature: gene Location: 82859-83206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PolY_Pol_V_umuC (cd01700)

Seq: CP041270.2 Enterococcus faecium strain VVEswe-S chromosome, complete genome (2851771 bp)
Overview 1 RT 1: 1830113-1837465 bp 2 RT 2: 2726389-2731192 bp Neighborhood of RT #1 [1830113, 1837467] Transposase_mut AAA_10 RVT-GII DDE_Tnp_1_3 AAA_10 Neighborhood of RT #2 [2726389, 2731206] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 1830113-1831300 bp Ori: QDZ47974.1 Feature: domain Description: Transposase_mut Location: 1830116-1831259 bp Feature: domain Description: Transposase_mut Location: 183 0116-183 1259 bp Feature: gene Location: 1831393-1832232 bp Feature: domain Description: AAA_10 Location: 1831399-1832218 bp Feature: domain Description: AAA_10 Location: 183 13 99-183 2218 bp Feature: gene Location: 1832345-1834171 bp Ori: QDZ47975.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832645-1833344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 2645-183 3 3 44 bp Feature: gene Location: 1834569-1835477 bp Ori: QDZ47976.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1834923-1835340 bp Feature: domain Description: DDE_Tnp_1_3 Location: 183 4923 -183 53 40 bp Feature: gene Location: 1835965-1837467 bp Feature: domain Description: AAA_10 Location: 1837294-1837465 bp Feature: domain Description: AAA_10 Location: 183 7294-183 7465 bp Feature: gene Location: 2726389-2727573 bp Ori: QDZ48774.1 Feature: domain Description: HTH_XRE Location: 2726419-2726563 bp Feature: domain Description: HTH_XRE Location: 2726419-2726563 bp Feature: domain Description: Rol_Rep_N Location: 2726596-2726860 bp Feature: domain Description: Rol_Rep_N Location: 2726596-2726860 bp Feature: domain Description: Rep_trans Location: 2726884-2727496 bp Feature: domain Description: Rep_trans Location: 2726884-2727496 bp Feature: gene Location: 2727588-2727707 bp Ori: QDZ48775.2 Feature: domain Description: DUF3789 Location: 2727597-2727690 bp Feature: domain Description: DUF3 789 Location: 2727597-2727690 bp Feature: gene Location: 2728452-2730362 bp Ori: QDZ48776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728785-2729523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728785-2729523 bp Feature: domain Description: HNHc Note: nucleases Location: 2730078-2730243 bp Feature: domain Description: HNHc Note: nucleases Location: 273 0078-273 0243 bp Feature: gene Location: 2730466-2730690 bp Feature: gene Location: 2730703-2731206 bp Ori: QDZ48777.1 Feature: domain Description: ArdA Location: 2730721-2731192 bp Feature: domain Description: ArdA Location: 273 0721-273 1192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), AAA_10 (pfam12846), RVT-GII, DDE_Tnp_1_3 (pfam13612), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275)