myRT

myRT report for GCA_007954685.1_ASM795468v1

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Seq: CP042392.1 Lactobacillus coryniformis strain CBA3616 chromosome, complete genome (3000133 bp)
Overview 1 RT 1: 750650-755567 bp 2 RT 2: 1249648-1254366 bp 3 RT 3: 2961872-2966471 bp Neighborhood of RT #1 [750650, 755567] ABC2_membrane_3 CcmA RVT-GII DUF4096 Neighborhood of RT #2 [1249648, 1254608] InsE PHA02517 RVT-GII GIIM PinE DDE_Tnp_1 Neighborhood of RT #3 [2961872, 2966479] PHA02517 HTH_28 HTH_28 HTH_28 group_II_RT_mat RVT-GII Cass2 AL_MDR Feature: gene Location: 750650-751867 bp Ori: QEA52509.1 Feature: domain Description: ABC2_membrane_3 Location: 750704-751838 bp Feature: domain Description: ABC2_membrane_3 Location: 750704-751 838 bp Feature: gene Location: 751845-752588 bp Ori: QEA52510.1 Feature: domain Description: CcmA Location: 751863-752535 bp Feature: domain Description: CcmA Location: 751 863-752535 bp Feature: gene Location: 752810-754193 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753128-753302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7531 28-753302 bp Feature: gene Location: 754780-755047 bp Ori: QEA52511.1 Feature: domain Description: DUF4096 Location: 754807-755002 bp Feature: domain Description: DUF4096 Location: 754807-755002 bp Feature: gene Location: 755047-755567 bp Feature: gene Location: 1249648-1249935 bp Ori: QEA52898.1 Feature: domain Description: InsE Location: 1249660-1249909 bp Feature: domain Description: InsE Location: 1 249660-1 249909 bp Feature: gene Location: 1249959-1250837 bp Ori: QEA52899.1 Feature: domain Description: PHA02517 Location: 1250022-1250829 bp Feature: domain Description: PHA0251 7 Location: 1 250022-1 250829 bp Feature: gene Location: 1250869-1252140 bp Ori: QEA52900.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251190-1251808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 251 1 90-1 251 808 bp Feature: domain Description: GIIM Note: maturase Location: 1251865-1252090 bp Feature: domain Description: GIIM Note: maturase Location: 1 251 865-1 252090 bp Feature: gene Location: 1252679-1253260 bp Ori: QEA52901.1 Feature: domain Description: PinE Location: 1252682-1253237 bp Feature: domain Description: PinE Location: 1 252682-1 253237 bp Feature: gene Location: 1253631-1254608 bp Feature: domain Description: DDE_Tnp_1 Location: 1253751-1254366 bp Feature: domain Description: DDE_Tnp_1 Location: 1 253751 -1 254366 bp Feature: gene Location: 2961872-2962765 bp Ori: QEA54345.1 Feature: domain Description: PHA02517 Location: 2962016-2962739 bp Feature: domain Description: PHA0251 7 Location: 296201 6-2962739 bp Feature: gene Location: 2962762-2963436 bp Ori: QEA54346.1 Feature: domain Description: HTH_28 Location: 2962828-2962927 bp Feature: domain Description: HTH_28 Location: 2962828-2962927 bp Feature: domain Description: HTH_28 Location: 2962966-2963116 bp Feature: domain Description: HTH_28 Location: 2962966-29631 1 6 bp Feature: domain Description: HTH_28 Location: 2963152-2963305 bp Feature: domain Description: HTH_28 Location: 29631 52-2963305 bp Feature: gene Location: 2963478-2964278 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 2963502-2963703 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2963502-2963703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2964144-2964255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29641 44-2964255 bp Feature: gene Location: 2964890-2965375 bp Ori: QEA54347.1 Feature: domain Description: Cass2 Location: 2964935-2965364 bp Feature: domain Description: Cass2 Location: 2964935-2965364 bp Feature: gene Location: 2965490-2966479 bp Feature: domain Description: AL_MDR Location: 2965520-2966471 bp Feature: domain Description: AL_MDR Location: 2965520-2966471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane_3 (pfam12698), CcmA (COG4133), RVT-GII, DUF4096 (pfam13340), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), PinE (COG1961), DDE_Tnp_1 (pfam01609), HTH_28 (pfam13518)
group_II_RT_mat (TIGR04416), Cass2 (pfam14526), AL_MDR (cd08252)