myRT

myRT report for GCA_007993775.1_ASM799377v1

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Seq: CP042468.1 Bradymonadales bacterium YN101 chromosome, complete genome (8047206 bp)
Overview 1 RT 1: 739915-746304 bp 2 RT 2: 1487443-1493862 bp 3 RT 3: 1921571-1927289 bp 4 RT 4: 2859160-2869296 bp 5 RT 5: 5604486-5616650 bp 6 RT 6: 5833908-5840227 bp 7 RT 7: 6745961-6750660 bp 8 RT 8: 6949953-6957291 bp Neighborhood of RT #1 [739915, 746366] mmdA RVT-GII UlaG Neighborhood of RT #2 [1487443, 1494365] Toprim_Crpt DUF3644 EC042_2821 RVT-UG12 COG2865 Neighborhood of RT #3 [1921571, 1927393] PRK06688 YhaK RVT-GII UlaG Neighborhood of RT #4 [2859160, 2869296] COG4637 COG4637 AAA_21 AAA_21 group_II_RT_mat RVT-UG6 Neighborhood of RT #5 [5604486, 5616650] WGR_DNA_ligase RVT-Retrons Neighborhood of RT #6 [5833908, 5840227] KOG1378 acyl_WS_DGAT RVT-GII Phage_holin_4_2 Neighborhood of RT #7 [6745961, 6750660] NADP_ADH RVT-GII Neighborhood of RT #8 [6949953, 6957299] InsE HTH_23 Tra5 RVT-GII GIIM Big_9 TSP3 TSP3 tand_rpt_95 TSP3 OmpA Feature: gene Location: 739915-741486 bp Ori: QED36042.1 Feature: domain Description: mmdA Location: 740044-741484 bp Feature: domain Description: mmdA Location: 740044-741 484 bp Feature: gene Location: 741676-742203 bp Feature: gene Location: 742717-743947 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742960-743581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742960-743581 bp Feature: gene Location: 744734-745357 bp Feature: gene Location: 745362-746366 bp Ori: QED30927.1 Feature: domain Description: UlaG Location: 745608-746304 bp Feature: domain Description: UlaG Location: 745608-746304 bp Feature: gene Location: 1487443-1487787 bp Ori: QED31425.1 Feature: domain Description: Toprim_Crpt Location: 1487605-1487782 bp Feature: domain Description: Toprim_Crpt Location: 1 487605-1 487782 bp Feature: gene Location: 1487741-1488703 bp Ori: QED31426.1 Feature: domain Description: DUF3644 Location: 1487870-1488068 bp Feature: domain Description: DUF3644 Location: 1 487870-1 488068 bp Feature: domain Description: EC042_2821 Location: 1488188-1488671 bp Feature: domain Description: EC042_2821 Location: 1 4881 88-1 488671 bp Feature: gene Location: 1488876-1490525 bp Ori: QED31427.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1489296-1489719 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 489296-1 48971 9 bp Feature: gene Location: 1490842-1492038 bp Feature: gene Location: 1492473-1494365 bp Ori: QED31429.1 Feature: domain Description: COG2865 Location: 1492593-1493862 bp Feature: domain Description: COG2865 Location: 1 492593-1 493862 bp Feature: gene Location: 1921571-1922356 bp Ori: QED31743.1 Feature: domain Description: PRK06688 Location: 1921580-1922354 bp Feature: domain Description: PRK06688 Location: 1 921 580-1 922354 bp Feature: gene Location: 1922471-1923499 bp Ori: QED31744.1 Feature: domain Description: YhaK Location: 1922552-1923395 bp Feature: domain Description: YhaK Location: 1 922552-1 923395 bp Feature: gene Location: 1923620-1924850 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1923863-1924484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 923863-1 924484 bp Feature: gene Location: 1925555-1926385 bp Feature: gene Location: 1926533-1927393 bp Ori: QED31746.1 Feature: domain Description: UlaG Location: 1926590-1927289 bp Feature: domain Description: UlaG Location: 1 926590-1 927289 bp Feature: gene Location: 2859160-2861046 bp Ori: QED32375.1 Feature: domain Description: COG4637 Location: 2859169-2859304 bp Feature: domain Description: COG4637 Location: 28591 69-2859304 bp Feature: domain Description: COG4637 Location: 2859739-2860279 bp Feature: domain Description: COG4637 Location: 2859739-2860279 bp Feature: gene Location: 2861083-2862798 bp Ori: QED32376.1 Feature: domain Description: AAA_21 Location: 2861170-2861233 bp Feature: domain Description: AAA_21 Location: 2861 1 70-2861 233 bp Feature: domain Description: AAA_21 Location: 2861821-2862088 bp Feature: domain Description: AAA_21 Location: 2861 821 -2862088 bp Feature: gene Location: 2862895-2867913 bp Ori: QED32377.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2863129-2863342 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 28631 29-2863342 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 2863954-2864191 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 2863954-28641 91 bp Feature: gene Location: 2868025-2868567 bp Feature: gene Location: 2868922-2869296 bp Feature: gene Location: 5604486-5607593 bp Ori: QED34290.1 Feature: domain Description: WGR_DNA_ligase Location: 5604507-5604732 bp Feature: domain Description: WGR_DNA_ligase Location: 5604507-5604732 bp Feature: gene Location: 5607596-5609212 bp Feature: gene Location: 5609544-5611070 bp Ori: QED34292.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5610087-5610702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 561 0087-561 0702 bp Feature: gene Location: 5611157-5612134 bp Feature: gene Location: 5612274-5616650 bp Feature: gene Location: 5833908-5835143 bp Ori: QED34460.1 Feature: domain Description: KOG1378 Location: 5834016-5834913 bp Feature: domain Description: KOG1 378 Location: 583401 6-583491 3 bp Feature: gene Location: 5835599-5837005 bp Ori: QED34461.1 Feature: domain Description: acyl_WS_DGAT Location: 5835641-5836982 bp Feature: domain Description: acyl_WS_DGAT Location: 5835641 -5836982 bp Feature: gene Location: 5837698-5838928 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5837941-5838562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5837941 -5838562 bp Feature: gene Location: 5839059-5839427 bp Ori: QED34462.1 Feature: domain Description: Phage_holin_4_2 Location: 5839074-5839395 bp Feature: domain Description: Phage_holin_4_2 Location: 5839074-5839395 bp Feature: gene Location: 5839589-5840227 bp Feature: gene Location: 6745961-6747016 bp Ori: QED36184.1 Feature: domain Description: NADP_ADH Location: 6745964-6747011 bp Feature: domain Description: NADP_ADH Location: 6745964-674701 1 bp Feature: gene Location: 6747063-6747323 bp Feature: gene Location: 6748166-6749396 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6748409-6749030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6748409-6749030 bp Feature: gene Location: 6749576-6750469 bp Feature: gene Location: 6750466-6750660 bp Feature: gene Location: 6949953-6950483 bp Ori: QED35265.1 Feature: domain Description: InsE Location: 6949962-6950163 bp Feature: domain Description: InsE Location: 6949962-69501 63 bp Feature: gene Location: 6950480-6951475 bp Ori: QED35266.1 Feature: domain Description: HTH_23 Location: 6950495-6950576 bp Feature: domain Description: HTH_23 Location: 6950495-6950576 bp Feature: domain Description: Tra5 Location: 6950729-6951335 bp Feature: domain Description: Tra5 Location: 6950729-6951 335 bp Feature: gene Location: 6951543-6952190 bp Ori: QED35267.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6951546-6952134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6951 546-69521 34 bp Feature: gene Location: 6952075-6952500 bp Ori: QED35268.1 Feature: domain Description: GIIM Note: maturase Location: 6952189-6952390 bp Feature: domain Description: GIIM Note: maturase Location: 69521 89-6952390 bp Feature: gene Location: 6952851-6957299 bp Ori: QED35269.1 Feature: domain Description: Big_9 Location: 6953667-6953910 bp Feature: domain Description: Big_9 Location: 6953667-695391 0 bp Feature: domain Description: TSP3 Location: 6953955-6954126 bp Feature: domain Description: TSP3 Location: 6953955-69541 26 bp Feature: domain Description: TSP3 Location: 6954132-6954270 bp Feature: domain Description: TSP3 Location: 69541 32-6954270 bp Feature: domain Description: tand_rpt_95 Location: 6954393-6954666 bp Feature: domain Description: tand_rpt_95 Location: 6954393-6954666 bp Feature: domain Description: TSP3 Location: 6955215-6955338 bp Feature: domain Description: TSP3 Location: 695521 5-6955338 bp Feature: domain Description: OmpA Location: 6956955-6957291 bp Feature: domain Description: OmpA Location: 6956955-6957291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mmdA (TIGR01117), RVT-GII, UlaG (COG2220), Toprim_Crpt (pfam13342), DUF3644 (pfam12358), EC042_2821 (pfam18740), RVT-UG12, COG2865 (Predicted transcriptional regulator, contains HTH domain ), PRK06688 (enoyl-CoA hydratase; Provisional), YhaK (COG1741)
COG4637 (Predicted ATPase ), AAA_21 (pfam13304), group_II_RT_mat (TIGR04416), RVT-UG6, WGR_DNA_ligase (cd07998), RVT-Retrons, KOG1378 (KOG1378, Purple acid phosphatase ), acyl_WS_DGAT (TIGR02946), Phage_holin_4_2 (pfam04020), NADP_ADH (cd08285)
InsE (COG2963), HTH_23 (pfam13384), Tra5 (COG2801), GIIM (pfam08388), Big_9 (pfam17963), TSP3 (sd00002), tand_rpt_95 (NF012211), OmpA (pfam00691)