myRT

myRT report for GCA_007998005.1_ASM799800v1

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Seq: CP042606.1 Escherichia coli strain NCYU-29-19 chromosome, complete genome (4711922 bp)
Overview 1 RT 1: 1252496-1256392 bp 2 RT 2: 2907699-2911482 bp 3 RT 3: 4180581-4184306 bp 4 RT 4: 4519182-4523073 bp Neighborhood of RT #1 [1252496, 1256807] APH PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [2907699, 2911484] DUF5445 InsA RVT-GII GIIM DDE_Tnp_1_assoc PRK01271 Neighborhood of RT #3 [4180581, 4184314] InsE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [4519182, 4523073] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1252496-1253299 bp Ori: QED67201.1 Gene: aph(3'')-Ib Feature: domain Description: APH Location: 1252538-1253291 bp Feature: domain Description: APH Location: 1 252538-1 253291 bp Feature: gene Location: 1253406-1253864 bp Feature: domain Description: PHA02517 Location: 1253409-1253856 bp Feature: domain Description: PHA0251 7 Location: 1 253409-1 253856 bp Feature: gene Location: 1253946-1255454 bp Ori: QED69173.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254204-1254936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 254204-1 254936 bp Feature: domain Description: GIIM Note: maturase Location: 1255011-1255209 bp Feature: domain Description: GIIM Note: maturase Location: 1 25501 1 -1 255209 bp Feature: gene Location: 1255764-1256135 bp Feature: gene Location: 1256128-1256807 bp Feature: domain Description: InsE Location: 1256140-1256392 bp Feature: domain Description: InsE Location: 1 2561 40-1 256392 bp Feature: gene Location: 2907699-2907911 bp Ori: QED68151.1 Feature: domain Description: DUF5445 Location: 2907756-2907909 bp Feature: domain Description: DUF5445 Location: 2907756-2907909 bp Feature: gene Location: 2908765-2909461 bp Feature: domain Description: InsA Location: 2908771-2909020 bp Feature: domain Description: InsA Location: 2908771 -2909020 bp Feature: gene Location: 2909519-2910224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2909525-2909834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2909525-2909834 bp Feature: domain Description: GIIM Note: maturase Location: 2909918-2910122 bp Feature: domain Description: GIIM Note: maturase Location: 290991 8-291 01 22 bp Feature: gene Location: 2910432-2911206 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2910453-2910714 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 291 0453-291 071 4 bp Feature: gene Location: 2911257-2911484 bp Ori: QED68152.1 Gene: pptA Feature: domain Description: PRK01271 Location: 2911260-2911482 bp Feature: domain Description: PRK01 271 Location: 291 1 260-291 1 482 bp Feature: gene Location: 4180581-4181320 bp Feature: domain Description: InsE Location: 4180584-4180920 bp Feature: domain Description: InsE Location: 41 80584-41 80920 bp Feature: gene Location: 4181313-4181684 bp Feature: gene Location: 4181993-4183501 bp Ori: QED69277.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4182251-4182983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 82251 -41 82983 bp Feature: domain Description: GIIM Note: maturase Location: 4183058-4183256 bp Feature: domain Description: GIIM Note: maturase Location: 41 83058-41 83256 bp Feature: gene Location: 4183582-4184070 bp Feature: domain Description: PHA02517 Location: 4183585-4184059 bp Feature: domain Description: PHA0251 7 Location: 41 83585-41 84059 bp Feature: gene Location: 4184120-4184314 bp Feature: domain Description: InsE Location: 4184135-4184306 bp Feature: domain Description: InsE Location: 41 841 35-41 84306 bp Feature: gene Location: 4519182-4519523 bp Feature: domain Description: PHA02517 Location: 4519203-4519524 bp Feature: domain Description: PHA0251 7 Location: 451 9203-451 9524 bp Feature: gene Location: 4519516-4519887 bp Feature: gene Location: 4520196-4521704 bp Ori: QED69287.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4520454-4521186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4520454-4521 1 86 bp Feature: domain Description: GIIM Note: maturase Location: 4521261-4521459 bp Feature: domain Description: GIIM Note: maturase Location: 4521 261 -4521 459 bp Feature: gene Location: 4521785-4522272 bp Feature: domain Description: PHA02517 Location: 4521788-4521968 bp Feature: domain Description: PHA0251 7 Location: 4521 788-4521 968 bp Feature: gene Location: 4522451-4523073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DUF5445 (pfam17520), InsA (COG3677), DDE_Tnp_1_assoc (pfam13808), PRK01271 (tautomerase PptA)