myRT

myRT report for GCA_008033235.1_ASM803323v1

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Seq: CP042432.1 Anseongella ginsenosidimutans strain Gsoil 524 chromosome, complete genome (4322684 bp)
Overview 1 RT 1: 804004-811363 bp 2 RT 2: 1452429-1459117 bp 3 RT 3: 1485537-1492635 bp 4 RT 4: 1988556-1991505 bp 5 RT 5: 3895947-3905476 bp 6 RT 6: 3983061-3987666 bp Neighborhood of RT #1 [804004, 811368] VKOR_4 Thioredoxin_4 DDE_5 RVT-GII GIIM BaeS OmpR Neighborhood of RT #2 [1452429, 1459117] PRK09183 COG4584 RVT-Retrons HTH_3 Neighborhood of RT #3 [1485537, 1492778] Phage_int_SAM_5 INTN1_C_like RVT-GII GIIM BetA Gluconate_2-dh3 Neighborhood of RT #4 [1988556, 1991570] thioredoxin RVT-GII GIIM PIN_3 Neighborhood of RT #5 [3895947, 3905481] ZnMc_pappalysin_like Por_Secre_tail Nudix_Hydrolase_28 RVT-GII GIIM SusD STN OMP_RagA_SusC Neighborhood of RT #6 [3983061, 3987701] HigB-like_toxin antidote_HigA RVT-GII GIIM YdfA_immunity dTDP_HR_like_SDR_e Feature: gene Location: 804004-805644 bp Ori: QEC51479.1 Feature: domain Description: VKOR_4 Location: 804574-804952 bp Feature: domain Description: VKOR_4 Location: 804574-804952 bp Feature: domain Description: Thioredoxin_4 Location: 805192-805639 bp Feature: domain Description: Thioredoxin_4 Location: 8051 92-805639 bp Feature: gene Location: 805753-806076 bp Ori: QEC51480.1 Feature: domain Description: DDE_5 Location: 805897-806053 bp Feature: domain Description: DDE_5 Location: 805897-806053 bp Feature: gene Location: 806605-808059 bp Ori: QEC51481.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806944-807565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806944-807565 bp Feature: domain Description: GIIM Note: maturase Location: 807619-807832 bp Feature: domain Description: GIIM Note: maturase Location: 80761 9-807832 bp Feature: gene Location: 808796-810679 bp Ori: QEC51482.1 Feature: domain Description: BaeS Location: 809969-810674 bp Feature: domain Description: BaeS Location: 809969-81 0674 bp Feature: gene Location: 810676-811368 bp Ori: QEC51483.1 Feature: domain Description: OmpR Location: 810688-811363 bp Feature: domain Description: OmpR Location: 81 0688-81 1 363 bp Feature: gene Location: 1452429-1453190 bp Ori: QEC51947.1 Feature: domain Description: PRK09183 Location: 1452435-1453164 bp Feature: domain Description: PRK091 83 Location: 1 452435-1 4531 64 bp Feature: gene Location: 1453271-1454827 bp Ori: QEC51948.1 Feature: domain Description: COG4584 Location: 1453295-1454168 bp Feature: domain Description: COG4584 Location: 1 453295-1 4541 68 bp Feature: gene Location: 1455330-1456193 bp Ori: QEC51949.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1455486-1456008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 455486-1 456008 bp Feature: gene Location: 1456195-1456479 bp Ori: QEC51950.1 Feature: domain Description: HTH_3 Location: 1456216-1456372 bp Feature: domain Description: HTH_3 Location: 1 45621 6-1 456372 bp Feature: gene Location: 1457687-1459117 bp Feature: gene Location: 1485537-1486487 bp Feature: gene Location: 1486477-1487856 bp Ori: QEC51981.1 Feature: domain Description: Phage_int_SAM_5 Location: 1486951-1487194 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 486951 -1 4871 94 bp Feature: domain Description: INTN1_C_like Location: 1487248-1487779 bp Feature: domain Description: INTN1 _C_like Location: 1 487248-1 487779 bp Feature: gene Location: 1488029-1489483 bp Ori: QEC51982.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488368-1488989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 488368-1 488989 bp Feature: domain Description: GIIM Note: maturase Location: 1489043-1489256 bp Feature: domain Description: GIIM Note: maturase Location: 1 489043-1 489256 bp Feature: gene Location: 1490334-1492069 bp Feature: domain Description: BetA Location: 1490370-1490478 bp Feature: domain Description: BetA Location: 1 490370-1 490478 bp Feature: gene Location: 1492080-1492778 bp Ori: QEC51983.1 Feature: domain Description: Gluconate_2-dh3 Location: 1492287-1492635 bp Feature: domain Description: Gluconate_2-dh3 Location: 1 492287-1 492635 bp Feature: gene Location: 1988556-1988876 bp Ori: QEC52349.1 Gene: trxA Feature: domain Description: thioredoxin Location: 1988574-1988865 bp Feature: domain Description: thioredoxin Location: 1 988574-1 988865 bp Feature: gene Location: 1989148-1989477 bp Feature: gene Location: 1989360-1990814 bp Ori: QEC52351.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989699-1990320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 989699-1 990320 bp Feature: domain Description: GIIM Note: maturase Location: 1990374-1990587 bp Feature: domain Description: GIIM Note: maturase Location: 1 990374-1 990587 bp Feature: gene Location: 1990913-1991164 bp Feature: gene Location: 1991157-1991570 bp Ori: QEC52353.1 Feature: domain Description: PIN_3 Location: 1991166-1991505 bp Feature: domain Description: PIN_3 Location: 1 991 1 66-1 991 505 bp Feature: gene Location: 3895947-3897602 bp Ori: QEC53764.1 Feature: domain Description: ZnMc_pappalysin_like Location: 3896412-3896760 bp Feature: domain Description: ZnMc_pappalysin_like Location: 389641 2-3896760 bp Feature: domain Description: Por_Secre_tail Location: 3897330-3897600 bp Feature: domain Description: Por_Secre_tail Location: 3897330-3897600 bp Feature: gene Location: 3897703-3898146 bp Ori: QEC53765.1 Feature: domain Description: Nudix_Hydrolase_28 Location: 3897727-3898063 bp Feature: domain Description: Nudix_Hydrolase_28 Location: 3897727-3898063 bp Feature: gene Location: 3898211-3899665 bp Ori: QEC53766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3898550-3899171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3898550-38991 71 bp Feature: domain Description: GIIM Note: maturase Location: 3899225-3899438 bp Feature: domain Description: GIIM Note: maturase Location: 3899225-3899438 bp Feature: gene Location: 3900153-3901913 bp Ori: QEC53767.1 Feature: domain Description: SusD Location: 3900294-3901737 bp Feature: domain Description: SusD Location: 3900294-3901 737 bp Feature: gene Location: 3901942-3905481 bp Ori: QEC53768.1 Feature: domain Description: STN Location: 3902149-3902293 bp Feature: domain Description: STN Location: 39021 49-3902293 bp Feature: domain Description: OMP_RagA_SusC Location: 3902371-3905476 bp Feature: domain Description: OMP_RagA_SusC Location: 3902371 -3905476 bp Feature: gene Location: 3983061-3983150 bp Ori: QEC53826.1 Feature: domain Description: HigB-like_toxin Location: 3983070-3983148 bp Feature: domain Description: HigB-like_toxin Location: 3983070-39831 48 bp Feature: gene Location: 3983181-3983420 bp Ori: QEC54331.1 Feature: domain Description: antidote_HigA Location: 3983190-3983415 bp Feature: domain Description: antidote_HigA Location: 39831 90-398341 5 bp Feature: gene Location: 3983488-3984942 bp Ori: QEC53827.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983827-3984448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983827-3984448 bp Feature: domain Description: GIIM Note: maturase Location: 3984502-3984715 bp Feature: domain Description: GIIM Note: maturase Location: 3984502-398471 5 bp Feature: gene Location: 3985805-3986773 bp Ori: QEC53828.1 Feature: domain Description: YdfA_immunity Location: 3985823-3986756 bp Feature: domain Description: YdfA_immunity Location: 3985823-3986756 bp Feature: gene Location: 3986793-3987701 bp Ori: QEC53829.1 Feature: domain Description: dTDP_HR_like_SDR_e Location: 3986805-3987666 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 3986805-3987666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VKOR_4 (cd12921), Thioredoxin_4 (pfam13462), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), BaeS (COG0642), OmpR (COG0745), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-Retrons
HTH_3 (pfam01381), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), BetA (COG2303), Gluconate_2-dh3 (pfam13618), thioredoxin (TIGR01068), PIN_3 (pfam13470), ZnMc_pappalysin_like (cd04275), Por_Secre_tail (TIGR04183), Nudix_Hydrolase_28 (cd04687)
SusD (NF033071), STN (smart00965), OMP_RagA_SusC (TIGR04056), HigB-like_toxin (pfam05015), antidote_HigA (TIGR02607), YdfA_immunity (pfam12127), dTDP_HR_like_SDR_e (cd05254)