myRT

myRT report for GCA_008065095.1_ASM806509v1

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Seq: CP042911.1 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome (8999201 bp)
Overview 1 RT 1: 1697816-1703947 bp 2 RT 2: 3333793-3338866 bp 3 RT 3: 4660785-4669232 bp 4 RT 4: 5005315-5010859 bp 5 RT 5: 5071498-5078271 bp 6 RT 6: 5939701-5942306 bp 7 RT 7: 6735162-6749374 bp Neighborhood of RT #1 [1697816, 1703947] XerC RVT-GII GIIM Neighborhood of RT #2 [3333793, 3338940] RVT-Retrons PAS_like PQQ_2 Neighborhood of RT #3 [4660785, 4669237] N_methyl SBP_bac_10 SBP_bac_10 RpoE WD40 WD40 WD40 RVT-GII GIIM HEAT_2 murB Neighborhood of RT #4 [5005315, 5010861] SIRT5_Af1_CobB PGM_like4 RVT-Retrons WcaJ_sugtrans Neighborhood of RT #5 [5071498, 5078408] Planc_Planc_Planc_TIGR03067 HEAT_2 HEAT HEAT_2 Aldo_ket_red RVT-Retrons FGE-sulfatase PQQ_3 PQQ_2 PQQ_3 Neighborhood of RT #6 [5939701, 5942314] DUF2171 RVT-GII InsE InsE Neighborhood of RT #7 [6735162, 6749550] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 SWIM RVT-Retrons Nnr1 HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Feature: gene Location: 1697816-1698331 bp Feature: gene Location: 1698647-1699771 bp Ori: QEG26701.1 Gene: xerC_3 Feature: domain Description: XerC Location: 1698878-1699634 bp Feature: domain Description: XerC Location: 1 698878-1 699634 bp Feature: gene Location: 1700482-1701900 bp Ori: QEG26702.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1700845-1701460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 700845-1 701 460 bp Feature: domain Description: GIIM Note: maturase Location: 1701508-1701712 bp Feature: domain Description: GIIM Note: maturase Location: 1 701 508-1 701 71 2 bp Feature: gene Location: 1702085-1702471 bp Feature: gene Location: 1702928-1703947 bp Feature: gene Location: 3333793-3334257 bp Feature: gene Location: 3334306-3334509 bp Feature: gene Location: 3334515-3336125 bp Ori: QEG28052.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3335283-3335898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3335283-3335898 bp Feature: gene Location: 3336273-3337973 bp Ori: QEG28053.1 Gene: atsA_4 Feature: domain Description: PAS_like Location: 3336333-3337860 bp Feature: domain Description: PAS_like Location: 3336333-3337860 bp Feature: gene Location: 3337993-3338940 bp Ori: QEG28054.1 Feature: domain Description: PQQ_2 Location: 3338095-3338866 bp Feature: domain Description: PQQ_2 Location: 3338095-3338866 bp Feature: gene Location: 4660785-4661750 bp Ori: QEG29168.1 Feature: domain Description: N_methyl Location: 4660815-4660878 bp Feature: domain Description: N_methyl Location: 466081 5-4660878 bp Feature: domain Description: SBP_bac_10 Location: 4660893-4661094 bp Feature: domain Description: SBP_bac_1 0 Location: 4660893-4661 094 bp Feature: domain Description: SBP_bac_10 Location: 4661229-4661685 bp Feature: domain Description: SBP_bac_1 0 Location: 4661 229-4661 685 bp Feature: gene Location: 4661855-4665235 bp Ori: QEG29169.1 Gene: sigE_37 Feature: domain Description: RpoE Location: 4661960-4662446 bp Feature: domain Description: RpoE Location: 4661 960-4662446 bp Feature: domain Description: WD40 Location: 4662869-4663556 bp Feature: domain Description: WD40 Location: 4662869-4663556 bp Feature: domain Description: WD40 Location: 4663682-4664027 bp Feature: domain Description: WD40 Location: 4663682-4664027 bp Feature: domain Description: WD40 Location: 4664390-4664702 bp Feature: domain Description: WD40 Location: 4664390-4664702 bp Feature: gene Location: 4665510-4666928 bp Ori: QEG29170.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4665873-4666488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4665873-4666488 bp Feature: domain Description: GIIM Note: maturase Location: 4666536-4666740 bp Feature: domain Description: GIIM Note: maturase Location: 4666536-4666740 bp Feature: gene Location: 4667441-4667980 bp Ori: QEG29171.1 Feature: domain Description: HEAT_2 Location: 4667555-4667837 bp Feature: domain Description: HEAT_2 Location: 4667555-4667837 bp Feature: gene Location: 4668359-4669237 bp Ori: QEG29172.1 Gene: murB Feature: domain Description: murB Location: 4668392-4669232 bp Feature: domain Description: murB Location: 4668392-4669232 bp Feature: gene Location: 5005315-5006064 bp Ori: QEG29441.1 Gene: cobB Feature: domain Description: SIRT5_Af1_CobB Location: 5005381-5006050 bp Feature: domain Description: SIRT5_Af1 _CobB Location: 5005381 -5006050 bp Feature: gene Location: 5006139-5007488 bp Ori: QEG29442.1 Gene: algC Feature: domain Description: PGM_like4 Location: 5006163-5007465 bp Feature: domain Description: PGM_like4 Location: 50061 63-5007465 bp Feature: gene Location: 5007549-5008907 bp Ori: QEG29443.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5008008-5008638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5008008-5008638 bp Feature: gene Location: 5009135-5009311 bp Feature: gene Location: 5009461-5010861 bp Ori: QEG29445.1 Gene: gumD Feature: domain Description: WcaJ_sugtrans Location: 5009506-5010859 bp Feature: domain Description: WcaJ_sugtrans Location: 5009506-501 0859 bp Feature: gene Location: 5071498-5071971 bp Ori: QEG29500.1 Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 5071597-5071912 bp Feature: domain Description: Planc_Planc_Planc_TIGR03067 Location: 5071 597-5071 91 2 bp Feature: gene Location: 5072393-5074450 bp Ori: QEG29501.1 Feature: domain Description: HEAT_2 Location: 5072552-5072780 bp Feature: domain Description: HEAT_2 Location: 5072552-5072780 bp Feature: domain Description: HEAT Location: 5072807-5072867 bp Feature: domain Description: HEAT Location: 5072807-5072867 bp Feature: domain Description: HEAT_2 Location: 5073029-5073227 bp Feature: domain Description: HEAT_2 Location: 5073029-5073227 bp Feature: domain Description: Aldo_ket_red Location: 5073854-5074385 bp Feature: domain Description: Aldo_ket_red Location: 5073854-5074385 bp Feature: gene Location: 5074522-5076072 bp Ori: QEG29502.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5075149-5075773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50751 49-5075773 bp Feature: gene Location: 5076069-5077049 bp Ori: QEG29503.1 Gene: pkn1_2 Feature: domain Description: FGE-sulfatase Location: 5076330-5077011 bp Feature: domain Description: FGE-sulfatase Location: 5076330-507701 1 bp Feature: gene Location: 5077080-5078408 bp Ori: QEG29504.1 Feature: domain Description: PQQ_3 Location: 5077251-5077323 bp Feature: domain Description: PQQ_3 Location: 5077251 -5077323 bp Feature: domain Description: PQQ_2 Location: 5077425-5078166 bp Feature: domain Description: PQQ_2 Location: 5077425-50781 66 bp Feature: domain Description: PQQ_3 Location: 5078211-5078271 bp Feature: domain Description: PQQ_3 Location: 507821 1 -5078271 bp Feature: gene Location: 5939701-5939892 bp Feature: gene Location: 5940032-5940415 bp Ori: QEG30253.1 Feature: domain Description: DUF2171 Location: 5940191-5940371 bp Feature: domain Description: DUF21 71 Location: 59401 91 -5940371 bp Feature: gene Location: 5940931-5941704 bp Ori: QEG30254.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5941294-5941684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5941 294-5941 684 bp Feature: gene Location: 5941736-5941966 bp Ori: QEG30255.1 Feature: domain Description: InsE Location: 5941748-5941931 bp Feature: domain Description: InsE Location: 5941 748-5941 931 bp Feature: gene Location: 5942027-5942314 bp Ori: QEG30256.1 Feature: domain Description: InsE Location: 5942039-5942306 bp Feature: domain Description: InsE Location: 5942039-5942306 bp Feature: gene Location: 6735162-6742103 bp Ori: QEG30901.1 Feature: domain Description: WD40 Location: 6735933-6736215 bp Feature: domain Description: WD40 Location: 6735933-673621 5 bp Feature: domain Description: WD40 Location: 6736272-6736563 bp Feature: domain Description: WD40 Location: 6736272-6736563 bp Feature: domain Description: HEAT_2 Location: 6736650-6736827 bp Feature: domain Description: HEAT_2 Location: 6736650-6736827 bp Feature: domain Description: HEAT_2 Location: 6737409-6737619 bp Feature: domain Description: HEAT_2 Location: 6737409-673761 9 bp Feature: domain Description: HEAT_2 Location: 6737886-6738018 bp Feature: domain Description: HEAT_2 Location: 6737886-673801 8 bp Feature: domain Description: HEAT_2 Location: 6738042-6738201 bp Feature: domain Description: HEAT_2 Location: 6738042-6738201 bp Feature: domain Description: HEAT_2 Location: 6738216-6738339 bp Feature: domain Description: HEAT_2 Location: 673821 6-6738339 bp Feature: domain Description: HEAT_2 Location: 6738387-6738594 bp Feature: domain Description: HEAT_2 Location: 6738387-6738594 bp Feature: domain Description: HEAT_2 Location: 6739266-6739425 bp Feature: domain Description: HEAT_2 Location: 6739266-6739425 bp Feature: domain Description: HEAT_2 Location: 6739716-6739938 bp Feature: domain Description: HEAT_2 Location: 673971 6-6739938 bp Feature: domain Description: HEAT_2 Location: 6740367-6740619 bp Feature: domain Description: HEAT_2 Location: 6740367-674061 9 bp Feature: domain Description: HEAT_2 Location: 6741519-6741726 bp Feature: domain Description: HEAT_2 Location: 6741 51 9-6741 726 bp Feature: domain Description: HEAT_2 Location: 6741849-6742035 bp Feature: domain Description: HEAT_2 Location: 6741 849-6742035 bp Feature: gene Location: 6742257-6744116 bp Ori: QEG30902.1 Feature: domain Description: SWIM Location: 6743721-6743841 bp Feature: domain Description: SWIM Location: 6743721 -6743841 bp Feature: gene Location: 6744312-6745649 bp Ori: QEG30903.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6744786-6745407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6744786-6745407 bp Feature: gene Location: 6745754-6746416 bp Ori: QEG30904.1 Gene: nnr_1 Feature: domain Description: Nnr1 Location: 6745766-6746351 bp Feature: domain Description: Nnr1 Location: 6745766-6746351 bp Feature: gene Location: 6747334-6749550 bp Ori: QEG30905.1 Gene: cya_2 Feature: domain Description: HemolysinCabind Location: 6747682-6747784 bp Feature: domain Description: HemolysinCabind Location: 6747682-6747784 bp Feature: domain Description: HemolysinCabind Location: 6747850-6747943 bp Feature: domain Description: HemolysinCabind Location: 6747850-6747943 bp Feature: domain Description: HemolysinCabind Location: 6747958-6748003 bp Feature: domain Description: HemolysinCabind Location: 6747958-6748003 bp Feature: domain Description: HemolysinCabind Location: 6748195-6748300 bp Feature: domain Description: HemolysinCabind Location: 67481 95-6748300 bp Feature: domain Description: HemolysinCabind Location: 6748357-6748459 bp Feature: domain Description: HemolysinCabind Location: 6748357-6748459 bp Feature: domain Description: HemolysinCabind Location: 6748618-6748675 bp Feature: domain Description: HemolysinCabind Location: 674861 8-6748675 bp Feature: domain Description: HemolysinCabind Location: 6748699-6748804 bp Feature: domain Description: HemolysinCabind Location: 6748699-6748804 bp Feature: domain Description: HemolysinCabind Location: 6748954-6749047 bp Feature: domain Description: HemolysinCabind Location: 6748954-6749047 bp Feature: domain Description: HemolysinCabind Location: 6749110-6749215 bp Feature: domain Description: HemolysinCabind Location: 67491 1 0-674921 5 bp Feature: domain Description: HemolysinCabind Location: 6749284-6749374 bp Feature: domain Description: HemolysinCabind Location: 6749284-6749374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-GII, GIIM (pfam08388), RVT-Retrons, PAS_like (cd16025), PQQ_2 (pfam13360), N_methyl (pfam07963), SBP_bac_10 (pfam07596), RpoE (COG3343), WD40 (smart00320)
HEAT_2 (pfam13646), murB (TIGR00179), SIRT5_Af1_CobB (cd01412), PGM_like4 (cd05803), WcaJ_sugtrans (TIGR03023), Planc_Planc_Planc_TIGR03067, HEAT (sd00044), Aldo_ket_red (pfam00248), FGE-sulfatase (pfam03781), PQQ_3 (pfam13570)
DUF2171 (pfam09939), InsE (COG2963), SWIM (pfam04434), Nnr1 (COG0062), HemolysinCabind (pfam00353)