myRT

myRT report for GCA_008065135.1_ASM806513v1

Download annotations/find similar RTs

Seq: CP042914.1 Roseimaritima ulvae strain UC8 chromosome, complete genome (8212515 bp)
Overview 1 RT 1: 3032814-3038619 bp 2 RT 2: 3405965-3419176 bp 3 RT 3: 3505389-3513287 bp 4 RT 4: 5314186-5321045 bp 5 RT 5: 6341480-6347398 bp 6 RT 6: 6869220-6878102 bp 7 RT 7: 7153392-7158735 bp Neighborhood of RT #1 [3032814, 3038705] Unstab_antitox RVT-GII COG3547 Neighborhood of RT #2 [3405965, 3419232] PRK11760 PLN02653 RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #3 [3505389, 3513613] YafY RVT-GII IAT_beta Beta_helix Beta_helix Neighborhood of RT #4 [5314186, 5321045] MviM RVT-GII GIIM HTH_MerR-trunc Neighborhood of RT #5 [6341480, 6347398] PRK05678 WcaJ_sugtrans RVT-GII GIIM QPRTase_NadC Neighborhood of RT #6 [6869220, 6878110] SDR_c PykF RVT-GII GIIM PSCyt1 PSCyt2 PSD1 DUF1501 Neighborhood of RT #7 [7153392, 7159196] RVT-GII YgiN TIGR02246 Feature: gene Location: 3032814-3033254 bp Feature: gene Location: 3033441-3033665 bp Ori: QEG40197.1 Feature: domain Description: Unstab_antitox Location: 3033474-3033633 bp Feature: domain Description: Unstab_antitox Location: 3033474-3033633 bp Feature: gene Location: 3034841-3035860 bp Ori: QEG40198.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3034844-3035486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3034844-3035486 bp Feature: gene Location: 3035860-3036114 bp Feature: gene Location: 3037605-3038705 bp Ori: QEG40200.1 Feature: domain Description: COG3547 Location: 3037722-3038619 bp Feature: domain Description: COG3547 Location: 3037722-303861 9 bp Feature: gene Location: 3405965-3407020 bp Ori: QEG40487.1 Feature: domain Description: PRK11760 Location: 3406412-3406979 bp Feature: domain Description: PRK1 1 760 Location: 340641 2-3406979 bp Feature: gene Location: 3407345-3408364 bp Ori: QEG40488.1 Gene: gmd_2 Feature: domain Description: PLN02653 Location: 3407354-3408335 bp Feature: domain Description: PLN02653 Location: 3407354-3408335 bp Feature: gene Location: 3409572-3410870 bp Ori: QEG40489.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3410025-3410664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 341 0025-341 0664 bp Feature: gene Location: 3410987-3412849 bp Feature: gene Location: 3412846-3419232 bp Ori: QEG40491.1 Feature: domain Description: WD40 Location: 3413143-3413773 bp Feature: domain Description: WD40 Location: 341 31 43-341 3773 bp Feature: domain Description: HEAT_2 Location: 3413800-3414037 bp Feature: domain Description: HEAT_2 Location: 341 3800-341 4037 bp Feature: domain Description: HEAT_2 Location: 3414100-3414310 bp Feature: domain Description: HEAT_2 Location: 341 41 00-341 431 0 bp Feature: domain Description: HEAT_2 Location: 3414649-3414901 bp Feature: domain Description: HEAT_2 Location: 341 4649-341 4901 bp Feature: domain Description: HEAT_2 Location: 3414955-3415207 bp Feature: domain Description: HEAT_2 Location: 341 4955-341 5207 bp Feature: domain Description: HEAT_2 Location: 3415333-3415486 bp Feature: domain Description: HEAT_2 Location: 341 5333-341 5486 bp Feature: domain Description: HEAT_2 Location: 3415492-3415633 bp Feature: domain Description: HEAT_2 Location: 341 5492-341 5633 bp Feature: domain Description: HEAT_2 Location: 3415672-3415855 bp Feature: domain Description: HEAT_2 Location: 341 5672-341 5855 bp Feature: domain Description: HEAT_2 Location: 3416563-3416728 bp Feature: domain Description: HEAT_2 Location: 341 6563-341 6728 bp Feature: domain Description: HEAT_2 Location: 3416923-3417166 bp Feature: domain Description: HEAT_2 Location: 341 6923-341 71 66 bp Feature: domain Description: HEAT_2 Location: 3417550-3417760 bp Feature: domain Description: HEAT_2 Location: 341 7550-341 7760 bp Feature: domain Description: HEAT_2 Location: 3418693-3418882 bp Feature: domain Description: HEAT_2 Location: 341 8693-341 8882 bp Feature: domain Description: HEAT_2 Location: 3419008-3419176 bp Feature: domain Description: HEAT_2 Location: 341 9008-341 91 76 bp Feature: gene Location: 3505389-3506261 bp Feature: gene Location: 3507374-3507691 bp Ori: QEG40534.1 Feature: domain Description: YafY Location: 3507395-3507659 bp Feature: domain Description: YafY Location: 3507395-3507659 bp Feature: gene Location: 3508296-3509789 bp Ori: QEG40535.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3508710-3509400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350871 0-3509400 bp Feature: gene Location: 3509855-3510418 bp Feature: gene Location: 3511364-3513613 bp Ori: QEG40537.1 Feature: domain Description: IAT_beta Location: 3511574-3511976 bp Feature: domain Description: IAT_beta Location: 351 1 574-351 1 976 bp Feature: domain Description: Beta_helix Location: 3512591-3512906 bp Feature: domain Description: Beta_helix Location: 351 2591 -351 2906 bp Feature: domain Description: Beta_helix Location: 3512921-3513287 bp Feature: domain Description: Beta_helix Location: 351 2921 -351 3287 bp Feature: gene Location: 5314186-5314533 bp Feature: gene Location: 5314535-5315629 bp Ori: QEG41821.1 Gene: iolG_12 Feature: domain Description: MviM Location: 5314631-5315588 bp Feature: domain Description: MviM Location: 531 4631 -531 5588 bp Feature: gene Location: 5316483-5317673 bp Ori: QEG41822.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5316705-5317326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 6705-531 7326 bp Feature: domain Description: GIIM Note: maturase Location: 5317371-5317605 bp Feature: domain Description: GIIM Note: maturase Location: 531 7371 -531 7605 bp Feature: gene Location: 5319611-5319733 bp Ori: QEG41823.1 Feature: domain Description: HTH_MerR-trunc Location: 5319653-5319713 bp Feature: domain Description: HTH_MerR-trunc Location: 531 9653-531 971 3 bp Feature: gene Location: 5319723-5321045 bp Feature: gene Location: 6341480-6342358 bp Ori: QEG42540.1 Gene: sucD_3 Feature: domain Description: PRK05678 Location: 6341483-6342347 bp Feature: domain Description: PRK05678 Location: 6341 483-6342347 bp Feature: gene Location: 6342467-6343873 bp Ori: QEG42541.1 Gene: wcaJ_2 Feature: domain Description: WcaJ_sugtrans Location: 6342539-6343871 bp Feature: domain Description: WcaJ_sugtrans Location: 6342539-6343871 bp Feature: gene Location: 6344793-6345983 bp Ori: QEG42542.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6345015-6345636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634501 5-6345636 bp Feature: domain Description: GIIM Note: maturase Location: 6345681-6345915 bp Feature: domain Description: GIIM Note: maturase Location: 6345681 -634591 5 bp Feature: gene Location: 6346310-6347257 bp Ori: QEG42543.1 Gene: nadC Feature: domain Description: QPRTase_NadC Location: 6346376-6347228 bp Feature: domain Description: QPRTase_NadC Location: 6346376-6347228 bp Feature: gene Location: 6347288-6347398 bp Feature: gene Location: 6869220-6870158 bp Ori: QEG42941.1 Feature: domain Description: SDR_c Location: 6869289-6870042 bp Feature: domain Description: SDR_c Location: 6869289-6870042 bp Feature: gene Location: 6870380-6871840 bp Ori: QEG42942.1 Gene: pyk Feature: domain Description: PykF Location: 6870407-6871808 bp Feature: domain Description: PykF Location: 6870407-6871 808 bp Feature: gene Location: 6872720-6873910 bp Ori: QEG42943.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6872942-6873563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6872942-6873563 bp Feature: domain Description: GIIM Note: maturase Location: 6873608-6873842 bp Feature: domain Description: GIIM Note: maturase Location: 6873608-6873842 bp Feature: gene Location: 6874198-6876582 bp Ori: QEG42944.1 Feature: domain Description: PSCyt1 Location: 6874363-6874534 bp Feature: domain Description: PSCyt1 Location: 6874363-6874534 bp Feature: domain Description: PSCyt2 Location: 6874672-6875287 bp Feature: domain Description: PSCyt2 Location: 6874672-6875287 bp Feature: domain Description: PSD1 Location: 6875644-6876415 bp Feature: domain Description: PSD1 Location: 6875644-687641 5 bp Feature: gene Location: 6876593-6878110 bp Ori: QEG42945.1 Feature: domain Description: DUF1501 Location: 6876773-6878102 bp Feature: domain Description: DUF1 501 Location: 6876773-68781 02 bp Feature: gene Location: 7153392-7154768 bp Feature: gene Location: 7154934-7155461 bp Feature: gene Location: 7155272-7156765 bp Ori: QEG43135.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7155686-7156376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 55686-71 56376 bp Feature: gene Location: 7157904-7158236 bp Ori: QEG43136.1 Feature: domain Description: YgiN Location: 7157907-7158165 bp Feature: domain Description: YgiN Location: 71 57907-71 581 65 bp Feature: gene Location: 7158261-7159196 bp Ori: QEG43137.1 Feature: domain Description: TIGR02246 Location: 7158378-7158735 bp Feature: domain Description: TIGR02246 Location: 71 58378-71 58735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Unstab_antitox (pfam09720), RVT-GII, COG3547 (Transposase ), PRK11760 (putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional), PLN02653 (GDP-mannose 4,6-dehydratase), RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646), YafY (COG2378), IAT_beta (pfam11924)
Beta_helix (pfam13229), MviM (COG0673), GIIM (pfam08388), HTH_MerR-trunc (cd04762), PRK05678 (succinyl-CoA synthetase subunit alpha; Validated), WcaJ_sugtrans (TIGR03023), QPRTase_NadC (cd01568), SDR_c (cd05233), PykF (COG0469), PSCyt1 (pfam07635)
PSCyt2 (pfam07583), PSD1 (pfam07587), DUF1501 (pfam07394), YgiN (COG1359), TIGR02246 (conserved hypothetical protein)