myRT

myRT report for GCA_008087625.1_ASM808762v1

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Seq: CP042997.1 Aquisphaera giovannonii strain OJF2 chromosome, complete genome (10370956 bp)
Overview 1 RT 1: 831253-838560 bp 2 RT 2: 6987981-6995291 bp 3 RT 3: 7362844-7372140 bp 4 RT 4: 7455184-7464730 bp 5 RT 5: 9251515-9255213 bp Neighborhood of RT #1 [831253, 838560] RVT-CRISPR-like zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Neighborhood of RT #2 [6987981, 6995365] TPR_12 TPR_12 DDE_Tnp_1 RVT-GII RVT-GII GIIM DDE_Tnp_ISAZ013 InsE Neighborhood of RT #3 [7362844, 7372316] Ceramidase_alk RVT-Retrons DUF1501 PSCyt1 PSCyt2 PSD1 Neighborhood of RT #4 [7455184, 7464756] RVT-Retrons STKc_PknB_like WD40 WD40 Sig-70_plancto1 Neighborhood of RT #5 [9251515, 9255224] COG2442 RVT-DGRs Hrd YfmG Feature: gene Location: 831253-832707 bp Feature: gene Location: 833230-833613 bp Feature: gene Location: 834488-836836 bp Ori: QEH32114.1 Gene: ltrA_1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 834881-835427 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 834881 -835427 bp Feature: gene Location: 837193-838407 bp Ori: QEH32115.1 Feature: domain Description: zf-ISL3 Location: 837307-837439 bp Feature: domain Description: zf-ISL3 Location: 837307-837439 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 837463-837601 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 837463-837601 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 837652-838369 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 837652-838369 bp Feature: gene Location: 838462-838560 bp Feature: gene Location: 6987981-6989015 bp Ori: QEH36741.1 Feature: domain Description: TPR_12 Location: 6988179-6988353 bp Feature: domain Description: TPR_1 2 Location: 69881 79-6988353 bp Feature: domain Description: TPR_12 Location: 6988395-6988605 bp Feature: domain Description: TPR_1 2 Location: 6988395-6988605 bp Feature: gene Location: 6989495-6990847 bp Ori: QEH36742.1 Feature: domain Description: DDE_Tnp_1 Location: 6989822-6990596 bp Feature: domain Description: DDE_Tnp_1 Location: 6989822-6990596 bp Feature: gene Location: 6991598-6992086 bp Ori: QEH36743.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6991880-6992063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6991 880-6992063 bp Feature: gene Location: 6992096-6992947 bp Ori: QEH36744.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6992099-6992579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6992099-6992579 bp Feature: domain Description: GIIM Note: maturase Location: 6992660-6992852 bp Feature: domain Description: GIIM Note: maturase Location: 6992660-6992852 bp Feature: gene Location: 6993855-6995039 bp Ori: QEH36745.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 6994101-6995022 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 69941 01 -6995022 bp Feature: gene Location: 6995081-6995365 bp Ori: QEH36746.1 Feature: domain Description: InsE Location: 6995096-6995291 bp Feature: domain Description: InsE Location: 6995096-6995291 bp Feature: gene Location: 7362844-7364571 bp Feature: gene Location: 7364699-7365991 bp Ori: QEH37006.1 Feature: domain Description: Ceramidase_alk Location: 7364888-7365365 bp Feature: domain Description: Ceramidase_alk Location: 7364888-7365365 bp Feature: gene Location: 7366255-7367610 bp Ori: QEH37007.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7366747-7367383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7366747-7367383 bp Feature: gene Location: 7367648-7369102 bp Ori: QEH37008.1 Feature: domain Description: DUF1501 Location: 7367858-7369094 bp Feature: domain Description: DUF1 501 Location: 7367858-7369094 bp Feature: gene Location: 7369122-7372316 bp Ori: QEH37009.1 Feature: domain Description: PSCyt1 Location: 7369329-7369509 bp Feature: domain Description: PSCyt1 Location: 7369329-7369509 bp Feature: domain Description: PSCyt2 Location: 7369659-7370277 bp Feature: domain Description: PSCyt2 Location: 7369659-7370277 bp Feature: domain Description: PSD1 Location: 7371366-7372140 bp Feature: domain Description: PSD1 Location: 7371 366-73721 40 bp Feature: gene Location: 7455184-7457034 bp Feature: gene Location: 7457321-7459021 bp Feature: gene Location: 7459029-7460639 bp Ori: QEH37070.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7459782-7460403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7459782-7460403 bp Feature: gene Location: 7460657-7464127 bp Ori: QEH37071.1 Gene: prkC_46 Feature: domain Description: STKc_PknB_like Location: 7460876-7461725 bp Feature: domain Description: STKc_PknB_like Location: 7460876-7461 725 bp Feature: domain Description: WD40 Location: 7463036-7463537 bp Feature: domain Description: WD40 Location: 7463036-7463537 bp Feature: domain Description: WD40 Location: 7463561-7464089 bp Feature: domain Description: WD40 Location: 7463561 -7464089 bp Feature: gene Location: 7464124-7464756 bp Ori: QEH37072.1 Gene: sigD_5 Feature: domain Description: Sig-70_plancto1 Location: 7464184-7464730 bp Feature: domain Description: Sig-70_plancto1 Location: 74641 84-7464730 bp Feature: gene Location: 9251515-9251757 bp Ori: QEH38392.1 Feature: domain Description: COG2442 Location: 9251533-9251734 bp Feature: domain Description: COG2442 Location: 9251 533-9251 734 bp Feature: gene Location: 9251754-9252074 bp Feature: gene Location: 9252018-9253058 bp Ori: QEH38394.1 Gene: ltrA_4 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9252231-9252816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9252231 -925281 6 bp Feature: gene Location: 9253003-9253527 bp Ori: QEH38395.1 Gene: recQ_2 Feature: domain Description: Hrd Location: 9253255-9253459 bp Feature: domain Description: Hrd Location: 9253255-9253459 bp Feature: gene Location: 9253692-9255224 bp Ori: QEH38396.1 Gene: pkn1_7 Feature: domain Description: YfmG Location: 9254466-9255213 bp Feature: domain Description: YfmG Location: 9254466-925521 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), TPR_12 (pfam13424), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISAZ013 (pfam07592), InsE (COG2963)
Ceramidase_alk (pfam04734), RVT-Retrons, DUF1501 (pfam07394), PSCyt1 (pfam07635), PSCyt2 (pfam07583), PSD1 (pfam07587), STKc_PknB_like (cd14014), WD40 (smart00320), Sig-70_plancto1 (TIGR02984), COG2442 (Uncharacterized conserved protein, DUF433 family )
RVT-DGRs, Hrd (LOAD_Hrd), YfmG (COG1262)