myRT

myRT report for GCA_008121495.1_ASM812149v1

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Seq: CP043051.1 [Ruminococcus] gnavus ATCC 29149 strain JCM6515 chromosome, complete genome (3552639 bp)
Overview 1 RT 1: 350187-354747 bp 2 RT 2: 1716038-1720287 bp 3 RT 3: 1742891-1755649 bp 4 RT 4: 2138236-2141763 bp Neighborhood of RT #1 [350187, 355103] Phage_XkdX bZIP_XBP1 RVT-DGRs DUF3751 Tail_P2_I Neighborhood of RT #2 [1716038, 1720287] MATE_MepA_like RVT-GII HTH_XRE DNA_ligase_A_N Neighborhood of RT #3 [1742891, 1755771] YdiL YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 DUF3848 DUF3849 Neighborhood of RT #4 [2138236, 2141852] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 350187-350333 bp Ori: QEI30748.1 Feature: domain Description: Phage_XkdX Location: 350193-350301 bp Feature: domain Description: Phage_XkdX Location: 3501 93-350301 bp Feature: gene Location: 350326-350724 bp Ori: QEI30749.1 Feature: domain Description: bZIP_XBP1 Location: 350587-350674 bp Feature: domain Description: bZIP_XBP1 Location: 350587-350674 bp Feature: gene Location: 350684-351829 bp Ori: QEI30750.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 350933-351659 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 350933-351 659 bp Feature: gene Location: 352290-354167 bp Ori: QEI30751.1 Feature: domain Description: DUF3751 Location: 352317-352743 bp Feature: domain Description: DUF3751 Location: 35231 7-352743 bp Feature: gene Location: 354180-355103 bp Ori: QEI30752.1 Feature: domain Description: Tail_P2_I Location: 354369-354747 bp Feature: domain Description: Tail_P2_I Location: 354369-354747 bp Feature: gene Location: 1716038-1717339 bp Ori: QEI31954.1 Feature: domain Description: MATE_MepA_like Location: 1716050-1717307 bp Feature: domain Description: MATE_MepA_like Location: 1 71 6050-1 71 7307 bp Feature: gene Location: 1717561-1717740 bp Feature: gene Location: 1717830-1719125 bp Ori: QEI31956.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718085-1718775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 8085-1 71 8775 bp Feature: gene Location: 1719300-1720106 bp Ori: QEI31957.1 Feature: domain Description: HTH_XRE Location: 1719327-1719498 bp Feature: domain Description: HTH_XRE Location: 1 71 9327-1 71 9498 bp Feature: domain Description: DNA_ligase_A_N Location: 1719831-1720077 bp Feature: domain Description: DNA_ligase_A_N Location: 1 71 9831 -1 720077 bp Feature: gene Location: 1720087-1720287 bp Feature: gene Location: 1742891-1743682 bp Ori: QEI31980.1 Feature: domain Description: YdiL Location: 1742903-1743509 bp Feature: domain Description: YdiL Location: 1 742903-1 743509 bp Feature: gene Location: 1743765-1751069 bp Feature: domain Description: YtxK Location: 1747791-1748466 bp Feature: domain Description: YtxK Location: 1 747791 -1 748466 bp Feature: domain Description: COG4646 Location: 1748535-1750929 bp Feature: domain Description: COG4646 Location: 1 748535-1 750929 bp Feature: gene Location: 1751581-1753359 bp Ori: QEI31981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1751842-1752634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 751 842-1 752634 bp Feature: domain Description: Intron_maturas2 Location: 1752739-1752955 bp Feature: domain Description: Intron_maturas2 Location: 1 752739-1 752955 bp Feature: domain Description: HNHc Note: nucleases Location: 1753135-1753321 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7531 35-1 753321 bp Feature: gene Location: 1753464-1754951 bp Feature: domain Description: KOG1000 Location: 1753947-1754151 bp Feature: domain Description: KOG1 000 Location: 1 753947-1 7541 51 bp Feature: gene Location: 1754953-1755771 bp Ori: QEI33703.1 Feature: domain Description: DUF3848 Location: 1754971-1755250 bp Feature: domain Description: DUF3848 Location: 1 754971 -1 755250 bp Feature: domain Description: DUF3849 Location: 1755286-1755649 bp Feature: domain Description: DUF3849 Location: 1 755286-1 755649 bp Feature: gene Location: 2138236-2139378 bp Ori: QEI32318.1 Feature: domain Description: PHA00653 Location: 2138359-2139376 bp Feature: domain Description: PHA00653 Location: 21 38359-21 39376 bp Feature: gene Location: 2139419-2139775 bp Ori: QEI32319.1 Gene: avd Feature: domain Description: Avd_like Location: 2139449-2139752 bp Feature: domain Description: Avd_like Location: 21 39449-21 39752 bp Feature: gene Location: 2140102-2141163 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2140330-2141032 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 40330-21 41 032 bp Feature: gene Location: 2141188-2141367 bp Feature: gene Location: 2141364-2141852 bp Ori: QEI32321.1 Feature: domain Description: Phage_holin_4_1 Location: 2141403-2141763 bp Feature: domain Description: Phage_holin_4_1 Location: 21 41 403-21 41 763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), bZIP_XBP1 (cd14691), RVT-DGRs, DUF3751 (pfam12571), Tail_P2_I (pfam09684), MATE_MepA_like (cd13143), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), YdiL (COG1266)
YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), Phage_holin_4_1 (pfam05105)