myRT

myRT report for GCA_008121535.1_ASM812153v1

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Seq: CP043057.1 Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence (96277 bp)
Overview 1 RT 1: 1774-11016 bp Neighborhood of RT #1 [1774, 11018] DUF4158 DDE_Tnp_Tn3 COG5421 RVT_N RVT-GII GIIM HNH Cas2_I_II_III cas1_CYANO Feature: gene Location: 1774-4761 bp Ori: QEI44345.1 Feature: domain Description: DUF4158 Location: 1780-2260 bp Feature: domain Description: DUF41 58 Location: 1 780-2260 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3526-4687 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3526-4687 bp Feature: gene Location: 5699-7387 bp Ori: QEI44346.1 Feature: domain Description: COG5421 Location: 5765-7280 bp Feature: domain Description: COG5421 Location: 5765-7280 bp Feature: gene Location: 8025-9683 bp Ori: QEI44347.1 Feature: domain Description: RVT_N Location: 8076-8319 bp Feature: domain Description: RVT_N Location: 8076-831 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8361-8985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8361 -8985 bp Feature: domain Description: GIIM Note: maturase Location: 9045-9270 bp Feature: domain Description: GIIM Note: maturase Location: 9045-9270 bp Feature: domain Description: HNH Note: nucleases Location: 9522-9660 bp Feature: domain Description: HNH Note: nucleases Location: 9522-9660 bp Feature: gene Location: 9724-9972 bp Ori: QEI44348.1 Feature: domain Description: Cas2_I_II_III Location: 9733-9937 bp Feature: domain Description: Cas2_I_II_III Location: 9733-9937 bp Feature: gene Location: 10014-11018 bp Ori: QEI44349.1 Feature: domain Description: cas1_CYANO Location: 10023-11016 bp Feature: domain Description: cas1 _CYANO Location: 1 0023-1 1 01 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), COG5421 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Cas2_I_II_III (cl11442), cas1_CYANO (TIGR04093)

Seq: CP043056.1 Dolichospermum sp. UHCC 0315A chromosome, complete genome (5407479 bp)
Overview 1 RT 1: 7915-11699 bp 2 RT 2: 1887615-1895573 bp 3 RT 3: 2124908-2132595 bp 4 RT 4: 3135915-3141414 bp 5 RT 5: 3901062-3908775 bp 6 RT 6: 5312976-5322218 bp Neighborhood of RT #1 [7915, 11713] HicB HicA_toxin TPR RVT-Retrons XisI XisH Neighborhood of RT #2 [1887615, 1895626] DDE_Tnp_1_3 COG5421 RVT_N RVT-GII GIIM HNH RVT-GII McrA ParG Neighborhood of RT #3 [2124908, 2132633] SkfB RVT-GII GIIM HNH DUF4158 DDE_Tnp_Tn3 xerC Neighborhood of RT #4 [3135915, 3141414] bZIP DDE_Tnp_Tn3 RVT_N RVT-GII GIIM TIGR04376 Neighborhood of RT #5 [3901062, 3908777] antidote_CC2985 GUN4 RVT_N RVT-GII GIIM HNH RVT_N RVT-GII GIIM STKc_PknB_like rpl35 Neighborhood of RT #6 [5312976, 5322220] DUF4158 DDE_Tnp_Tn3 COG5421 RVT_N RVT-GII GIIM HNH Cas2_I_II_III cas1_CYANO Feature: gene Location: 7915-8136 bp Ori: QEI39464.1 Feature: domain Description: HicB Location: 7918-8098 bp Feature: domain Description: HicB Location: 7918-8098 bp Feature: gene Location: 8136-8390 bp Ori: QEI39465.1 Feature: domain Description: HicA_toxin Location: 8199-8310 bp Feature: domain Description: HicA_toxin Location: 8199-8310 bp Feature: gene Location: 8920-10620 bp Ori: QEI39466.1 Feature: domain Description: TPR Location: 8944-9118 bp Feature: domain Description: TPR Location: 8944-9118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9514-10135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9514-10135 bp Feature: gene Location: 10980-11309 bp Ori: QEI39467.1 Feature: domain Description: XisI Location: 10995-11301 bp Feature: domain Description: XisI Location: 10995-11301 bp Feature: gene Location: 11297-11713 bp Ori: QEI39468.1 Feature: domain Description: XisH Location: 11300-11699 bp Feature: domain Description: XisH Location: 11300-11699 bp Feature: gene Location: 1887615-1887863 bp Ori: QEI41210.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1887618-1887723 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1887618-188772 3 bp Feature: gene Location: 1888245-1889933 bp Ori: QEI41211.1 Feature: domain Description: COG5421 Location: 1888311-1889826 bp Feature: domain Description: COG542 1 Location: 1888311-188982 6 bp Feature: gene Location: 1890230-1891888 bp Ori: QEI41212.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 1890281-1890524 bp Feature: domain Description: RVT_N Location: 18902 81-189052 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890566-1891190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890566-1891190 bp Feature: domain Description: GIIM Note: maturase Location: 1891250-1891475 bp Feature: domain Description: GIIM Note: maturase Location: 18912 50-1891475 bp Feature: domain Description: HNH Note: nucleases Location: 1891727-1891865 bp Feature: domain Description: HNH Note: nucleases Location: 189172 7-1891865 bp Feature: gene Location: 1892564-1893538 bp Ori: QEI41213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892594-1892954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892 594-1892 954 bp Feature: domain Description: McrA Location: 1893185-1893509 bp Feature: domain Description: McrA Location: 1893185-1893509 bp Feature: gene Location: 1895059-1895208 bp Feature: gene Location: 1895438-1895626 bp Ori: QEI41215.1 Feature: domain Description: ParG Location: 1895471-1895573 bp Feature: domain Description: ParG Location: 1895471-1895573 bp Feature: gene Location: 2124908-2126251 bp Ori: QEI41454.1 Feature: domain Description: SkfB Location: 2125052-2126177 bp Feature: domain Description: SkfB Location: 2 12 5052 -2 12 6177 bp Feature: gene Location: 2126861-2127220 bp Feature: gene Location: 2127323-2128486 bp Ori: QEI41456.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127386-2127788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 7386-2 12 7788 bp Feature: domain Description: GIIM Note: maturase Location: 2127848-2128073 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 7848-2 12 8073 bp Feature: domain Description: HNH Note: nucleases Location: 2128325-2128463 bp Feature: domain Description: HNH Note: nucleases Location: 2 12 832 5-2 12 8463 bp Feature: gene Location: 2128476-2131463 bp Ori: QEI41457.1 Feature: domain Description: DUF4158 Location: 2128482-2128962 bp Feature: domain Description: DUF4158 Location: 2 12 8482 -2 12 8962 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2130228-2131389 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 1302 2 8-2 131389 bp Feature: gene Location: 2131725-2132633 bp Ori: QEI41458.1 Gene: xerD_1 Feature: domain Description: xerC Location: 2131779-2132595 bp Feature: domain Description: xerC Location: 2 131779-2 132 595 bp Feature: gene Location: 3135915-3136553 bp Ori: QEI42369.1 Feature: domain Description: bZIP Location: 3136032-3136116 bp Feature: domain Description: bZIP Location: 3136032 -3136116 bp Feature: gene Location: 3136700-3137701 bp Ori: QEI42370.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 3136715-3137627 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3136715-313762 7 bp Feature: gene Location: 3138537-3140030 bp Ori: QEI42371.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 3138573-3138819 bp Feature: domain Description: RVT_N Location: 3138573-3138819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3138870-3139527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3138870-313952 7 bp Feature: domain Description: GIIM Note: maturase Location: 3139584-3139779 bp Feature: domain Description: GIIM Note: maturase Location: 3139584-3139779 bp Feature: gene Location: 3140554-3141135 bp Ori: QEI42372.1 Feature: domain Description: TIGR04376 Location: 3140560-3141106 bp Feature: domain Description: TIGR04376 Location: 3140560-3141106 bp Feature: gene Location: 3141205-3141414 bp Feature: gene Location: 3901062-3901328 bp Ori: QEI43032.1 Feature: domain Description: antidote_CC2985 Location: 3901065-3901227 bp Feature: domain Description: antidote_CC2 985 Location: 3901065-39012 2 7 bp Feature: gene Location: 3901875-3902237 bp Ori: QEI43033.1 Feature: domain Description: GUN4 Location: 3901878-3902172 bp Feature: domain Description: GUN4 Location: 3901878-3902 172 bp Feature: gene Location: 3902369-3904027 bp Ori: QEI43034.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 3902420-3902663 bp Feature: domain Description: RVT_N Location: 3902 42 0-3902 663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3902705-3903329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3902 705-390332 9 bp Feature: domain Description: GIIM Note: maturase Location: 3903389-3903614 bp Feature: domain Description: GIIM Note: maturase Location: 3903389-3903614 bp Feature: domain Description: HNH Note: nucleases Location: 3903866-3904004 bp Feature: domain Description: HNH Note: nucleases Location: 3903866-3904004 bp Feature: gene Location: 3904970-3906373 bp Ori: QEI43035.1 Gene: ltrA_5 Feature: domain Description: RVT_N Location: 3905006-3905252 bp Feature: domain Description: RVT_N Location: 3905006-39052 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905303-3905930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905303-3905930 bp Feature: domain Description: GIIM Note: maturase Location: 3905987-3906185 bp Feature: domain Description: GIIM Note: maturase Location: 3905987-3906185 bp Feature: gene Location: 3906925-3907944 bp Ori: QEI43036.1 Gene: prkC_2 Feature: domain Description: STKc_PknB_like Location: 3906967-3907744 bp Feature: domain Description: STKc_PknB_like Location: 3906967-3907744 bp Feature: gene Location: 3908580-3908777 bp Ori: QEI43037.1 Gene: rpmI Feature: domain Description: rpl35 Location: 3908583-3908775 bp Feature: domain Description: rpl35 Location: 3908583-3908775 bp Feature: gene Location: 5312976-5315963 bp Ori: QEI44288.1 Feature: domain Description: DUF4158 Location: 5312982-5313462 bp Feature: domain Description: DUF4158 Location: 5312 982 -5313462 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5314728-5315889 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 531472 8-5315889 bp Feature: gene Location: 5316901-5318589 bp Ori: QEI44289.1 Feature: domain Description: COG5421 Location: 5316967-5318482 bp Feature: domain Description: COG542 1 Location: 5316967-5318482 bp Feature: gene Location: 5319227-5320885 bp Ori: QEI44290.1 Gene: ltrA_6 Feature: domain Description: RVT_N Location: 5319278-5319521 bp Feature: domain Description: RVT_N Location: 53192 78-531952 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5319563-5320187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5319563-532 0187 bp Feature: domain Description: GIIM Note: maturase Location: 5320247-5320472 bp Feature: domain Description: GIIM Note: maturase Location: 532 02 47-532 0472 bp Feature: domain Description: HNH Note: nucleases Location: 5320724-5320862 bp Feature: domain Description: HNH Note: nucleases Location: 532 072 4-532 0862 bp Feature: gene Location: 5320926-5321174 bp Ori: QEI44291.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 5320935-5321139 bp Feature: domain Description: Cas2 _I_II_III Location: 532 0935-532 1139 bp Feature: gene Location: 5321216-5322220 bp Ori: QEI44292.1 Gene: cas1 Feature: domain Description: cas1_CYANO Location: 5321225-5322218 bp Feature: domain Description: cas1_CYANO Location: 532 12 2 5-532 2 2 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), HicA_toxin (pfam07927), TPR (smart00028), RVT-Retrons, XisI (pfam08869), XisH (pfam08814), DDE_Tnp_1_3 (pfam13612), COG5421 (Transposase ), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HNH (pfam01844), McrA (COG4058), ParG (pfam09274), SkfB (COG0535), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), xerC (PRK01287), bZIP (cl21462), TIGR04376 (TIGR04376 family protein)
antidote_CC2985 (TIGR02606), GUN4 (pfam05419), STKc_PknB_like (cd14014), rpl35 (CHL00103), Cas2_I_II_III (cl11442), cas1_CYANO (TIGR04093)