myRT

myRT report for GCA_008124005.1_ASM812400v1

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Seq: CP043217.1 Escherichia coli O80:H26 strain EC-107 chromosome, complete genome (5075343 bp)
Overview 1 RT 1: 1193754-1200680 bp 2 RT 2: 1859109-1862849 bp Neighborhood of RT #1 [1193754, 1201570] Q RVT-Retrons RVT-AbiP2 Phage_GPA Neighborhood of RT #2 [1859109, 1862849] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 1193754-1194774 bp Feature: domain Description: Q Location: 1193757-1194561 bp Feature: domain Description: Q Location: 1 1 93757-1 1 94561 bp Feature: gene Location: 1194817-1195524 bp Feature: gene Location: 1195521-1196747 bp Ori: QEI65729.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1195707-1196289 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 95707-1 1 96289 bp Feature: gene Location: 1197262-1198806 bp Ori: QEI65730.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1197679-1198132 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 1 97679-1 1 981 32 bp Feature: gene Location: 1198972-1199190 bp Feature: gene Location: 1199294-1201570 bp Ori: QEI65732.1 Feature: domain Description: Phage_GPA Location: 1199693-1200680 bp Feature: domain Description: Phage_GPA Location: 1 1 99693-1 200680 bp Feature: gene Location: 1859109-1859848 bp Feature: domain Description: InsE Location: 1859112-1859448 bp Feature: domain Description: InsE Location: 1 8591 1 2-1 859448 bp Feature: gene Location: 1859841-1860212 bp Feature: gene Location: 1860521-1862029 bp Ori: QEI69234.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860779-1861511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 860779-1 861 51 1 bp Feature: domain Description: GIIM Note: maturase Location: 1861586-1861784 bp Feature: domain Description: GIIM Note: maturase Location: 1 861 586-1 861 784 bp Feature: gene Location: 1862110-1862595 bp Feature: domain Description: PHA02517 Location: 1862113-1862584 bp Feature: domain Description: PHA0251 7 Location: 1 8621 1 3-1 862584 bp Feature: gene Location: 1862592-1862849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)