myRT

myRT report for GCA_008124425.1_ASM812442v1

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Seq: CP043228.1 Escherichia coli strain Ec-050 plasmid pEc-050-TEM-30, complete sequence (115935 bp)
Overview 1 RT 1: 19104-22241 bp Neighborhood of RT #1 [19104, 22241] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 19104-19310 bp Feature: gene Location: 19476-19544 bp Feature: gene Location: 20275-21942 bp Ori: QEJ65301.1 Gene: ltrA Feature: domain Description: RVT_N Location: 20323-20560 bp Feature: domain Description: RVT_N Location: 20323-20560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20611-21253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 1 -21 253 bp Feature: domain Description: GIIM Note: maturase Location: 21304-21538 bp Feature: domain Description: GIIM Note: maturase Location: 21 304-21 538 bp Feature: domain Description: HNHc Note: nucleases Location: 21748-21907 bp Feature: domain Description: HNHc Note: nucleases Location: 21 748-21 907 bp Feature: gene Location: 21920-22105 bp Feature: gene Location: 22146-22241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CP043227.1 Escherichia coli strain Ec-050 chromosome, complete genome (4848863 bp)
Overview 1 RT 1: 120646-126080 bp 2 RT 2: 2128479-2132762 bp 3 RT 3: 2435241-2438605 bp 4 RT 4: 3612053-3619558 bp 5 RT 5: 3631095-3634901 bp Neighborhood of RT #1 [120646, 126079] PHA02517 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #2 [2128479, 2132770] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [2435241, 2439002] DUF1016_N PHA02517 RVT-GII InsE Neighborhood of RT #4 [3612053, 3619955] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [3631095, 3634901] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 120646-122556 bp Feature: gene Location: 122598-123071 bp Feature: domain Description: PHA02517 Location: 122604-123069 bp Feature: domain Description: PHA02 517 Location: 12 2 604-12 3069 bp Feature: gene Location: 123161-124669 bp Ori: QEJ65070.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123419-124151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3419-12 4151 bp Feature: domain Description: GIIM Note: maturase Location: 124226-124424 bp Feature: domain Description: GIIM Note: maturase Location: 12 42 2 6-12 442 4 bp Feature: gene Location: 124978-125349 bp Feature: gene Location: 125342-126079 bp Feature: domain Description: InsE Location: 125345-125684 bp Feature: domain Description: InsE Location: 12 5345-12 5684 bp Feature: domain Description: PHA02517 Location: 125960-126080 bp Feature: domain Description: PHA02 517 Location: 12 5960-12 6080 bp Feature: gene Location: 2128479-2129384 bp Feature: gene Location: 2129358-2129645 bp Feature: gene Location: 2129870-2130261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130200-2130260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1302 00-2 1302 60 bp Feature: gene Location: 2130437-2130958 bp Ori: QEJ62736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130443-2130725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 130443-2 13072 5 bp Feature: domain Description: GIIM Note: maturase Location: 2130773-2130953 bp Feature: domain Description: GIIM Note: maturase Location: 2 130773-2 130953 bp Feature: gene Location: 2131280-2131468 bp Feature: gene Location: 2131541-2132770 bp Ori: QEJ62738.1 Feature: domain Description: YesM Location: 2132021-2132762 bp Feature: domain Description: YesM Location: 2 132 02 1-2 132 762 bp Feature: gene Location: 2435241-2435477 bp Feature: domain Description: DUF1016_N Location: 2435298-2435475 bp Feature: domain Description: DUF1016_N Location: 2 4352 98-2 435475 bp Feature: gene Location: 2435520-2435993 bp Feature: domain Description: PHA02517 Location: 2435526-2435991 bp Feature: domain Description: PHA02 517 Location: 2 43552 6-2 435991 bp Feature: gene Location: 2436083-2437590 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2436341-2436983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 436341-2 436983 bp Feature: gene Location: 2437899-2438270 bp Feature: gene Location: 2438263-2439002 bp Feature: domain Description: InsE Location: 2438266-2438605 bp Feature: domain Description: InsE Location: 2 4382 66-2 438605 bp Feature: gene Location: 3612053-3612325 bp Ori: QEJ64025.1 Feature: domain Description: PRK09678 Location: 3612062-3612218 bp Feature: domain Description: PRK09678 Location: 3612 062 -3612 2 18 bp Feature: gene Location: 3612971-3613939 bp Feature: gene Location: 3613941-3614873 bp Ori: QEJ64026.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3614043-3614637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3614043-3614637 bp Feature: gene Location: 3615328-3616430 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3615337-3615589 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3615337-3615589 bp Feature: gene Location: 3616472-3616945 bp Feature: domain Description: PHA02517 Location: 3616478-3616943 bp Feature: domain Description: PHA02 517 Location: 3616478-3616943 bp Feature: gene Location: 3617035-3618543 bp Ori: QEJ65228.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3617293-3618025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36172 93-361802 5 bp Feature: domain Description: GIIM Note: maturase Location: 3618100-3618298 bp Feature: domain Description: GIIM Note: maturase Location: 3618100-36182 98 bp Feature: gene Location: 3618852-3619223 bp Feature: gene Location: 3619216-3619955 bp Feature: domain Description: InsE Location: 3619219-3619558 bp Feature: domain Description: InsE Location: 36192 19-3619558 bp Feature: gene Location: 3631095-3631812 bp Feature: domain Description: InsE Location: 3631134-3631383 bp Feature: domain Description: InsE Location: 3631134-3631383 bp Feature: gene Location: 3631808-3632176 bp Feature: gene Location: 3632485-3633993 bp Ori: QEJ65229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3632743-3633475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3632 743-3633475 bp Feature: domain Description: GIIM Note: maturase Location: 3633550-3633748 bp Feature: domain Description: GIIM Note: maturase Location: 3633550-3633748 bp Feature: gene Location: 3634074-3634561 bp Feature: domain Description: PHA02517 Location: 3634077-3634248 bp Feature: domain Description: PHA02 517 Location: 3634077-36342 48 bp Feature: gene Location: 3634644-3634901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), YesM (COG2972), DUF1016_N (pfam17761), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)