myRT

myRT report for GCA_008254045.1_ASM825404v1

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Seq: CP042425.1 Gemmataceae bacterium PX52 chromosome, complete genome (9378099 bp)
Overview 1 RT 1: 173843-187126 bp 2 RT 2: 3936190-3943947 bp 3 RT 3: 4392276-4396508 bp 4 RT 4: 4807474-4815009 bp 5 RT 5: 5153595-5160558 bp 6 RT 6: 6132418-6140875 bp Neighborhood of RT #1 [173843, 187137] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_PBS HEAT_2 HEAT_2 RVT-Retrons DUF4058 DUF4058 STKc_PknB_like RpfG Neighborhood of RT #2 [3936190, 3944000] STKc_PknB_like WD40 pfam03781 RVT-Retrons HEAT_2 HEAT_2 Aldo_ket_red Bna5 Neighborhood of RT #3 [4392276, 4396630] INT_ICEBs1_C_like RVT-Retrons HTH_32 Neighborhood of RT #4 [4807474, 4815023] RVT-Retrons DinB KOG3178 Neighborhood of RT #5 [5153595, 5160674] Gly-zipper_YMGG RVT-CRISPR-like HTH_17 Neighborhood of RT #6 [6132418, 6141546] NadB PGM_like4 RVT-Retrons NHL_like_3 vWFA GATase1_like vWFA GATase1_like YtkA Feature: gene Location: 173843-180103 bp Ori: QEL13293.1 Feature: domain Description: WD40 Location: 174173-174434 bp Feature: domain Description: WD40 Location: 1 741 73-1 74434 bp Feature: domain Description: WD40 Location: 174494-174743 bp Feature: domain Description: WD40 Location: 1 74494-1 74743 bp Feature: domain Description: HEAT_2 Location: 174869-175046 bp Feature: domain Description: HEAT_2 Location: 1 74869-1 75046 bp Feature: domain Description: HEAT_2 Location: 175103-175265 bp Feature: domain Description: HEAT_2 Location: 1 751 03-1 75265 bp Feature: domain Description: HEAT_2 Location: 175598-175802 bp Feature: domain Description: HEAT_2 Location: 1 75598-1 75802 bp Feature: domain Description: HEAT_2 Location: 175850-175994 bp Feature: domain Description: HEAT_2 Location: 1 75850-1 75994 bp Feature: domain Description: HEAT_2 Location: 176045-176189 bp Feature: domain Description: HEAT_2 Location: 1 76045-1 761 89 bp Feature: domain Description: HEAT_2 Location: 176210-176366 bp Feature: domain Description: HEAT_2 Location: 1 7621 0-1 76366 bp Feature: domain Description: HEAT_2 Location: 176372-176504 bp Feature: domain Description: HEAT_2 Location: 1 76372-1 76504 bp Feature: domain Description: HEAT_2 Location: 176552-176759 bp Feature: domain Description: HEAT_2 Location: 1 76552-1 76759 bp Feature: domain Description: HEAT Location: 176972-177032 bp Feature: domain Description: HEAT Location: 1 76972-1 77032 bp Feature: domain Description: HEAT_2 Location: 177437-177590 bp Feature: domain Description: HEAT_2 Location: 1 77437-1 77590 bp Feature: domain Description: HEAT_2 Location: 177779-178004 bp Feature: domain Description: HEAT_2 Location: 1 77779-1 78004 bp Feature: domain Description: HEAT_2 Location: 178397-178610 bp Feature: domain Description: HEAT_2 Location: 1 78397-1 7861 0 bp Feature: domain Description: HEAT_PBS Location: 178637-178703 bp Feature: domain Description: HEAT_PBS Location: 1 78637-1 78703 bp Feature: domain Description: HEAT_2 Location: 178793-179039 bp Feature: domain Description: HEAT_2 Location: 1 78793-1 79039 bp Feature: domain Description: HEAT_2 Location: 179885-180056 bp Feature: domain Description: HEAT_2 Location: 1 79885-1 80056 bp Feature: gene Location: 180219-182060 bp Feature: gene Location: 182208-183512 bp Ori: QEL13295.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182661-183279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 82661 -1 83279 bp Feature: gene Location: 183960-184649 bp Ori: QEL13296.1 Feature: domain Description: DUF4058 Location: 183963-184116 bp Feature: domain Description: DUF4058 Location: 1 83963-1 841 1 6 bp Feature: domain Description: DUF4058 Location: 184143-184620 bp Feature: domain Description: DUF4058 Location: 1 841 43-1 84620 bp Feature: gene Location: 184885-187137 bp Ori: QEL13297.1 Feature: domain Description: STKc_PknB_like Location: 185143-185926 bp Feature: domain Description: STKc_PknB_like Location: 1 851 43-1 85926 bp Feature: domain Description: RpfG Location: 186046-187126 bp Feature: domain Description: RpfG Location: 1 86046-1 871 26 bp Feature: gene Location: 3936190-3938667 bp Ori: QEL16373.1 Feature: domain Description: STKc_PknB_like Location: 3936724-3937498 bp Feature: domain Description: STKc_PknB_like Location: 3936724-3937498 bp Feature: domain Description: WD40 Location: 3937771-3938659 bp Feature: domain Description: WD40 Location: 3937771 -3938659 bp Feature: gene Location: 3938832-3939812 bp Ori: QEL16374.1 Feature: domain Description: pfam03781 Location: 3939084-3939771 bp Feature: domain Description: pfam03781 Location: 3939084-3939771 bp Feature: gene Location: 3939809-3941329 bp Ori: QEL16375.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940457-3941078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940457-3941 078 bp Feature: gene Location: 3941412-3943394 bp Ori: QEL16376.1 Feature: domain Description: HEAT_2 Location: 3941478-3941634 bp Feature: domain Description: HEAT_2 Location: 3941 478-3941 634 bp Feature: domain Description: HEAT_2 Location: 3941643-3941862 bp Feature: domain Description: HEAT_2 Location: 3941 643-3941 862 bp Feature: domain Description: Aldo_ket_red Location: 3942810-3943332 bp Feature: domain Description: Aldo_ket_red Location: 394281 0-3943332 bp Feature: gene Location: 3943785-3944000 bp Ori: QEL16377.1 Feature: domain Description: Bna5 Location: 3943848-3943947 bp Feature: domain Description: Bna5 Location: 3943848-3943947 bp Feature: gene Location: 4392276-4392725 bp Feature: gene Location: 4392753-4393085 bp Feature: gene Location: 4393358-4394767 bp Ori: QEL16784.1 Feature: domain Description: INT_ICEBs1_C_like Location: 4393949-4394063 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 4393949-4394063 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4394264-4394552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4394264-4394552 bp Feature: gene Location: 4395473-4396036 bp Feature: gene Location: 4396205-4396630 bp Ori: QEL16786.1 Feature: domain Description: HTH_32 Location: 4396355-4396508 bp Feature: domain Description: HTH_32 Location: 4396355-4396508 bp Feature: gene Location: 4807474-4809288 bp Feature: gene Location: 4809806-4811497 bp Feature: gene Location: 4811516-4813126 bp Ori: QEL17117.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4812287-4812905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 481 2287-481 2905 bp Feature: gene Location: 4813433-4813945 bp Ori: QEL17118.1 Feature: domain Description: DinB Location: 4813445-4813895 bp Feature: domain Description: DinB Location: 481 3445-481 3895 bp Feature: gene Location: 4814007-4815023 bp Ori: QEL17119.1 Feature: domain Description: KOG3178 Location: 4814049-4815009 bp Feature: domain Description: KOG31 78 Location: 481 4049-481 5009 bp Feature: gene Location: 5153595-5154842 bp Feature: gene Location: 5154889-5155419 bp Ori: QEL17401.1 Feature: domain Description: Gly-zipper_YMGG Location: 5155030-5155159 bp Feature: domain Description: Gly-zipper_YMGG Location: 51 55030-51 551 59 bp Feature: gene Location: 5155530-5158784 bp Ori: QEL17402.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5157582-5158131 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 51 57582-51 581 31 bp Feature: gene Location: 5159332-5160126 bp Feature: gene Location: 5160381-5160674 bp Ori: QEL17404.1 Feature: domain Description: HTH_17 Location: 5160402-5160558 bp Feature: domain Description: HTH_1 7 Location: 51 60402-51 60558 bp Feature: gene Location: 6132418-6134070 bp Ori: QEL18262.1 Gene: nadB Feature: domain Description: NadB Location: 6132478-6134005 bp Feature: domain Description: NadB Location: 61 32478-61 34005 bp Feature: gene Location: 6134031-6135377 bp Ori: QEL18263.1 Gene: glmM Feature: domain Description: PGM_like4 Location: 6134052-6135357 bp Feature: domain Description: PGM_like4 Location: 61 34052-61 35357 bp Feature: gene Location: 6135397-6136716 bp Ori: QEL18264.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6135835-6136480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 35835-61 36480 bp Feature: gene Location: 6136997-6137926 bp Ori: QEL18265.1 Feature: domain Description: NHL_like_3 Location: 6137105-6137918 bp Feature: domain Description: NHL_like_3 Location: 61 371 05-61 3791 8 bp Feature: gene Location: 6137926-6141546 bp Ori: QEL18266.1 Feature: domain Description: vWFA Location: 6138484-6138925 bp Feature: domain Description: vWFA Location: 61 38484-61 38925 bp Feature: domain Description: GATase1_like Location: 6139570-6139702 bp Feature: domain Description: GATase1 _like Location: 61 39570-61 39702 bp Feature: domain Description: vWFA Location: 6139801-6140158 bp Feature: domain Description: vWFA Location: 61 39801 -61 401 58 bp Feature: domain Description: GATase1_like Location: 6140347-6140620 bp Feature: domain Description: GATase1 _like Location: 61 40347-61 40620 bp Feature: domain Description: YtkA Location: 6140659-6140875 bp Feature: domain Description: YtkA Location: 61 40659-61 40875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), HEAT_PBS (pfam03130), RVT-Retrons, DUF4058 (pfam13267), STKc_PknB_like (cd14014), RpfG (COG3437), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Aldo_ket_red (pfam00248)
Bna5 (COG3844), INT_ICEBs1_C_like (cd01189), HTH_32 (pfam13565), DinB (pfam05163), KOG3178 (KOG3178, Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases ), Gly-zipper_YMGG (pfam13441), RVT-CRISPR, HTH_17 (pfam12728), NadB (COG0029), PGM_like4 (cd05803)
NHL_like_3 (cd14956), vWFA (cl00057), GATase1_like (pfam07090), YtkA (pfam13115)