myRT

myRT report for GCA_008274825.1_ASM827482v1

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Seq: CP030848.1 Sphingobacterium hotanense strain AMCC101218 chromosome, complete genome (4490254 bp)
Overview 1 RT 1: 1-4319 bp 2 RT 2: 590331-598088 bp 3 RT 3: 2415548-2424612 bp 4 RT 4: 2633786-2642545 bp 5 RT 5: 3260250-3265798 bp 6 RT 6: 3528662-3534846 bp 7 RT 7: 4300624-4308880 bp Neighborhood of RT #1 [1, 4330] dnaA RVT-GII GIIM PRK10455 PRK10455 LpxK Neighborhood of RT #2 [590331, 598088] CSP_CDS DUF72 RVT-UG5 nitrilase Neighborhood of RT #3 [2415548, 2424614] Transposase_20 COG3547 RVT-GII GIIM RVT-GII GIIM leuS Neighborhood of RT #4 [2633786, 2642553] COG3547 RVT-GII GIIM RVT-GII GIIM HEAT_2 HEAT_2 HEAT_2 HEAT_2 DUF1080 DUF1080 Neighborhood of RT #5 [3260250, 3265798] Ribosomal_L21p RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #6 [3528662, 3534846] TatA GIIM RVT-GII RVT-GII GIIM Neighborhood of RT #7 [4300624, 4308885] ADP_ribosyl_GH RVT-GII SusD OMP_RagA_SusC Feature: gene Location: 1-1428 bp Feature: domain Description: dnaA Location: 19-1420 bp Feature: domain Description: dnaA Location: 1 9-1 420 bp Feature: gene Location: 1747-2529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750-1969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 750-1 969 bp Feature: domain Description: GIIM Note: maturase Location: 2026-2245 bp Feature: domain Description: GIIM Note: maturase Location: 2026-2245 bp Feature: gene Location: 2665-3042 bp Feature: domain Description: PRK10455 Location: 2770-2851 bp Feature: domain Description: PRK1 0455 Location: 2770-2851 bp Feature: domain Description: PRK10455 Location: 2860-3025 bp Feature: domain Description: PRK1 0455 Location: 2860-3025 bp Feature: gene Location: 3308-4330 bp Feature: domain Description: LpxK Location: 3320-4319 bp Feature: domain Description: LpxK Location: 3320-431 9 bp Feature: gene Location: 590331-590759 bp Feature: domain Description: CSP_CDS Location: 590577-590751 bp Feature: domain Description: CSP_CDS Location: 590577-590751 bp Feature: gene Location: 591043-591921 bp Feature: domain Description: DUF72 Location: 591205-591859 bp Feature: domain Description: DUF72 Location: 591 205-591 859 bp Feature: gene Location: 593164-596340 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 593725-594223 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 593725-594223 bp Feature: domain Description: nitrilase Location: 595582-596245 bp Feature: domain Description: nitrilase Location: 595582-596245 bp Feature: gene Location: 596484-596642 bp Feature: gene Location: 596820-598088 bp Feature: gene Location: 2415548-2416117 bp Feature: domain Description: Transposase_20 Location: 2415653-2415890 bp Feature: domain Description: Transposase_20 Location: 241 5653-241 5890 bp Feature: gene Location: 2416484-2417710 bp Feature: domain Description: COG3547 Location: 2416526-2417573 bp Feature: domain Description: COG3547 Location: 241 6526-241 7573 bp Feature: gene Location: 2418047-2419321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418242-2418857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 8242-241 8857 bp Feature: domain Description: GIIM Note: maturase Location: 2418914-2419142 bp Feature: domain Description: GIIM Note: maturase Location: 241 891 4-241 91 42 bp Feature: gene Location: 2419613-2420920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2419877-2420534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 9877-2420534 bp Feature: domain Description: GIIM Note: maturase Location: 2420618-2420834 bp Feature: domain Description: GIIM Note: maturase Location: 242061 8-2420834 bp Feature: gene Location: 2421070-2421423 bp Feature: gene Location: 2421831-2424614 bp Feature: domain Description: leuS Location: 2421834-2424612 bp Feature: domain Description: leuS Location: 2421 834-242461 2 bp Feature: gene Location: 2633786-2634778 bp Feature: domain Description: COG3547 Location: 2633807-2634659 bp Feature: domain Description: COG3547 Location: 2633807-2634659 bp Feature: gene Location: 2635069-2635251 bp Feature: gene Location: 2635379-2636692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2635613-2636228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263561 3-2636228 bp Feature: domain Description: GIIM Note: maturase Location: 2636285-2636513 bp Feature: domain Description: GIIM Note: maturase Location: 2636285-263651 3 bp Feature: gene Location: 2636946-2638253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637210-2637867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263721 0-2637867 bp Feature: domain Description: GIIM Note: maturase Location: 2637951-2638167 bp Feature: domain Description: GIIM Note: maturase Location: 2637951 -26381 67 bp Feature: gene Location: 2638403-2638756 bp Feature: gene Location: 2639161-2642553 bp Feature: domain Description: HEAT_2 Location: 2639476-2639680 bp Feature: domain Description: HEAT_2 Location: 2639476-2639680 bp Feature: domain Description: HEAT_2 Location: 2640013-2640169 bp Feature: domain Description: HEAT_2 Location: 264001 3-26401 69 bp Feature: domain Description: HEAT_2 Location: 2640448-2640697 bp Feature: domain Description: HEAT_2 Location: 2640448-2640697 bp Feature: domain Description: HEAT_2 Location: 2640853-2640964 bp Feature: domain Description: HEAT_2 Location: 2640853-2640964 bp Feature: domain Description: DUF1080 Location: 2641336-2641930 bp Feature: domain Description: DUF1 080 Location: 2641 336-2641 930 bp Feature: domain Description: DUF1080 Location: 2641984-2642545 bp Feature: domain Description: DUF1 080 Location: 2641 984-2642545 bp Feature: gene Location: 3260250-3260561 bp Feature: domain Description: Ribosomal_L21p Location: 3260253-3260553 bp Feature: domain Description: Ribosomal_L21 p Location: 3260253-3260553 bp Feature: gene Location: 3260615-3260800 bp Feature: gene Location: 3261106-3262380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261301-3261916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261 301 -3261 91 6 bp Feature: domain Description: GIIM Note: maturase Location: 3261973-3262201 bp Feature: domain Description: GIIM Note: maturase Location: 3261 973-3262201 bp Feature: gene Location: 3262672-3263979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262936-3263593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262936-3263593 bp Feature: domain Description: GIIM Note: maturase Location: 3263677-3263893 bp Feature: domain Description: GIIM Note: maturase Location: 3263677-3263893 bp Feature: gene Location: 3264129-3264482 bp Feature: gene Location: 3264869-3265798 bp Feature: gene Location: 3528662-3529189 bp Feature: domain Description: TatA Location: 3528683-3528929 bp Feature: domain Description: TatA Location: 3528683-3528929 bp Feature: gene Location: 3529397-3529708 bp Feature: domain Description: GIIM Note: maturase Location: 3529403-3529529 bp Feature: domain Description: GIIM Note: maturase Location: 3529403-3529529 bp Feature: gene Location: 3529724-3530671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3529919-3530534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352991 9-3530534 bp Feature: gene Location: 3530968-3532275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3531232-3531889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3531 232-3531 889 bp Feature: domain Description: GIIM Note: maturase Location: 3531973-3532189 bp Feature: domain Description: GIIM Note: maturase Location: 3531 973-35321 89 bp Feature: gene Location: 3532425-3532778 bp Feature: gene Location: 3533188-3534846 bp Feature: gene Location: 4300624-4302177 bp Feature: domain Description: ADP_ribosyl_GH Location: 4300753-4301623 bp Feature: domain Description: ADP_ribosyl_GH Location: 4300753-4301 623 bp Feature: gene Location: 4302662-4302940 bp Feature: gene Location: 4302945-4303349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4302948-4303167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4302948-43031 67 bp Feature: gene Location: 4303721-4305373 bp Feature: domain Description: SusD Location: 4304054-4305242 bp Feature: domain Description: SusD Location: 4304054-4305242 bp Feature: gene Location: 4305376-4308885 bp Feature: domain Description: OMP_RagA_SusC Location: 4305457-4308880 bp Feature: domain Description: OMP_RagA_SusC Location: 4305457-4308880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaA (PRK14088), RVT-GII, GIIM (pfam08388), PRK10455 (periplasmic protein; Reviewed), LpxK (pfam02606), CSP_CDS (cd04458), DUF72 (pfam01904), RVT-UG5, nitrilase (cl11424), Transposase_20 (pfam02371)
COG3547 (Transposase ), leuS (PRK12300), HEAT_2 (pfam13646), DUF1080 (pfam06439), Ribosomal_L21p (pfam00829), TatA (COG1826), ADP_ribosyl_GH (pfam03747), SusD (NF033071), OMP_RagA_SusC (TIGR04056)