myRT

myRT report for GCA_008274905.1_ASM827490v1

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Seq: CP031070.1 Bacillus sp. JAS24-2 plasmid pl278, complete sequence (277779 bp)
Overview 1 RT 1: 5530-13579 bp 2 RT 2: 67998-72896 bp 3 RT 3: 80841-84425 bp 4 RT 4: 209333-212174 bp 5 RT 5: 260926-263369 bp Neighborhood of RT #1 [5530, 13579] InsQ RVT-GII RVT_N RVT-GII HNHc Neighborhood of RT #2 [67998, 73012] PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 DUF202 Neighborhood of RT #3 [80841, 84425] xerC DDE_Tnp_1 RVT-GII GIIM Neighborhood of RT #4 [209333, 212174] RVT-GII GIIM Neighborhood of RT #5 [260926, 263369] DDE_Tnp_1 RVT-GII Feature: gene Location: 5530-6844 bp Feature: gene Location: 7206-8324 bp Ori: QEL82778.1 Feature: domain Description: InsQ Location: 7215-8298 bp Feature: domain Description: InsQ Location: 721 5-8298 bp Feature: gene Location: 8526-9690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8529-9204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8529-9204 bp Feature: gene Location: 9671-9991 bp Ori: QEL82779.1 Feature: domain Description: RVT_N Location: 9704-9923 bp Feature: domain Description: RVT_N Location: 9704-9923 bp Feature: gene Location: 10441-10939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10447-10585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0447-1 0585 bp Feature: gene Location: 11129-11767 bp Ori: QEL82780.1 Feature: domain Description: HNHc Note: nucleases Location: 11489-11642 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 489-1 1 642 bp Feature: gene Location: 12524-13579 bp Feature: gene Location: 67998-68396 bp Feature: gene Location: 68612-69357 bp Feature: domain Description: PDDEXK_2 Location: 68717-68984 bp Feature: domain Description: PDDEXK_2 Location: 6871 7-68984 bp Feature: gene Location: 69332-71158 bp Ori: QEL82918.1 Gene: ltrA Feature: domain Description: RVT_N Location: 69380-69623 bp Feature: domain Description: RVT_N Location: 69380-69623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69680-70349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69680-70349 bp Feature: domain Description: GIIM Note: maturase Location: 70409-70643 bp Feature: domain Description: GIIM Note: maturase Location: 70409-70643 bp Feature: domain Description: HNHc Note: nucleases Location: 70841-71009 bp Feature: domain Description: HNHc Note: nucleases Location: 70841 -71 009 bp Feature: gene Location: 71759-72055 bp Feature: domain Description: PDDEXK_2 Location: 71837-72056 bp Feature: domain Description: PDDEXK_2 Location: 71 837-72056 bp Feature: gene Location: 72641-73012 bp Ori: QEL82919.1 Feature: domain Description: DUF202 Location: 72689-72896 bp Feature: domain Description: DUF202 Location: 72689-72896 bp Feature: gene Location: 80841-82001 bp Ori: QEL82811.1 Feature: domain Description: xerC Location: 81057-81969 bp Feature: domain Description: xerC Location: 81 057-81 969 bp Feature: gene Location: 82191-82433 bp Feature: domain Description: DDE_Tnp_1 Location: 82200-82302 bp Feature: domain Description: DDE_Tnp_1 Location: 82200-82302 bp Feature: gene Location: 82577-83884 bp Ori: QEL82812.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82862-83501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82862-83501 bp Feature: domain Description: GIIM Note: maturase Location: 83576-83801 bp Feature: domain Description: GIIM Note: maturase Location: 83576-83801 bp Feature: gene Location: 84058-84237 bp Feature: gene Location: 84327-84425 bp Feature: gene Location: 209333-209725 bp Feature: gene Location: 209820-210206 bp Feature: gene Location: 210350-211657 bp Ori: QEL82872.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210635-211274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0635-21 1 274 bp Feature: domain Description: GIIM Note: maturase Location: 211349-211574 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 349-21 1 574 bp Feature: gene Location: 211831-212010 bp Feature: gene Location: 212100-212174 bp Feature: gene Location: 260926-261924 bp Feature: domain Description: DDE_Tnp_1 Location: 261283-261925 bp Feature: domain Description: DDE_Tnp_1 Location: 261 283-261 925 bp Feature: gene Location: 261927-262001 bp Feature: gene Location: 262193-262700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262478-262631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262478-262631 bp Feature: gene Location: 262699-263048 bp Feature: gene Location: 263027-263369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, RVT_N (pfam13655), HNHc (smart00507), PDDEXK_2 (pfam12784), GIIM (pfam08388), DUF202 (pfam02656), xerC (PRK01287), DDE_Tnp_1 (pfam01609)