myRT

myRT report for GCA_008330945.1_ASM833094v1

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Seq: CP043489.1 Labrys neptuniae strain KNU-23 chromosome 1, complete sequence (5388854 bp)
Overview 1 RT 1: 909902-916516 bp 2 RT 2: 2443595-2448463 bp 3 RT 3: 4014689-4023541 bp Neighborhood of RT #1 [909902, 916617] PRK05298 RVT-Retrons Polysacc_lyase Neighborhood of RT #2 [2443595, 2448567] RVT-UG12 PRK12828 MhpC Neighborhood of RT #3 [4014689, 4023609] WGR_DNA_ligase SWIM RVT-Retrons YhjR YhjR Yip1 Feature: gene Location: 909902-912712 bp Ori: QEN87341.1 Gene: uvrB Feature: domain Description: PRK05298 Location: 910433-912401 bp Feature: domain Description: PRK05298 Location: 91 0433-91 2401 bp Feature: gene Location: 913005-913958 bp Feature: gene Location: 913959-914918 bp Ori: QEN87343.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 914064-914646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91 4064-91 4646 bp Feature: gene Location: 915037-915411 bp Feature: gene Location: 915487-916617 bp Ori: QEN87345.1 Feature: domain Description: Polysacc_lyase Location: 915715-916516 bp Feature: domain Description: Polysacc_lyase Location: 91 571 5-91 651 6 bp Feature: gene Location: 2443595-2443831 bp Feature: gene Location: 2444146-2444370 bp Feature: gene Location: 2444570-2446171 bp Ori: QEN88590.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2444897-2445353 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 2444897-2445353 bp Feature: gene Location: 2446474-2447184 bp Ori: QEN88591.1 Feature: domain Description: PRK12828 Location: 2446492-2447170 bp Feature: domain Description: PRK1 2828 Location: 2446492-24471 70 bp Feature: gene Location: 2447395-2448567 bp Ori: QEN88592.1 Feature: domain Description: MhpC Location: 2447542-2448463 bp Feature: domain Description: MhpC Location: 2447542-2448463 bp Feature: gene Location: 4014689-4017853 bp Ori: QEN89917.1 Feature: domain Description: WGR_DNA_ligase Location: 4014707-4014938 bp Feature: domain Description: WGR_DNA_ligase Location: 401 4707-401 4938 bp Feature: gene Location: 4017850-4019520 bp Ori: QEN89918.1 Feature: domain Description: SWIM Location: 4019371-4019461 bp Feature: domain Description: SWIM Location: 401 9371 -401 9461 bp Feature: gene Location: 4019930-4021765 bp Ori: QEN89919.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4020482-4021100 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4020482-4021 1 00 bp Feature: gene Location: 4021948-4022901 bp Ori: QEN89920.1 Feature: domain Description: YhjR Location: 4021978-4022155 bp Feature: domain Description: YhjR Location: 4021 978-40221 55 bp Feature: domain Description: YhjR Location: 4022176-4022683 bp Feature: domain Description: YhjR Location: 40221 76-4022683 bp Feature: gene Location: 4022977-4023609 bp Ori: QEN89921.1 Feature: domain Description: Yip1 Location: 4023070-4023541 bp Feature: domain Description: Yip1 Location: 4023070-4023541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05298 (excinuclease ABC subunit UvrB), RVT-Retrons, Polysacc_lyase (pfam14099), RVT-UG12, PRK12828 (short chain dehydrogenase; Provisional), MhpC (COG0596), WGR_DNA_ligase (cd07998), SWIM (pfam04434), YhjR (COG1633), Yip1 (pfam04893)