myRT

myRT report for GCA_008369625.1_ASM836962v1

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Seq: CP043557.1 Vibrio cholerae strain RFB05 chromosome 1, complete sequence (3162181 bp)
Overview 1 RT 1: 551755-560402 bp 2 RT 2: 1699666-1705783 bp Neighborhood of RT #1 [551755, 560402] DnaG PRK05658 RVT-GII Intron_maturas2 HNHc PRK09692 Neighborhood of RT #2 [1699666, 1705812] AlsT RVT-GII Intron_maturas2 HNHc YaaA PRK11449 Feature: gene Location: 551755-553518 bp Ori: QEO44287.1 Gene: dnaG Feature: domain Description: DnaG Location: 551770-553495 bp Feature: domain Description: DnaG Location: 551 770-553495 bp Feature: gene Location: 553617-555494 bp Ori: QEO44288.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 553623-555492 bp Feature: domain Description: PRK05658 Location: 553623-555492 bp Feature: gene Location: 556468-558336 bp Ori: QEO44289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556738-557557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556738-557557 bp Feature: domain Description: Intron_maturas2 Location: 557659-557983 bp Feature: domain Description: Intron_maturas2 Location: 557659-557983 bp Feature: domain Description: HNHc Note: nucleases Location: 558115-558274 bp Feature: domain Description: HNHc Note: nucleases Location: 5581 1 5-558274 bp Feature: gene Location: 558693-559934 bp Ori: QEO44290.1 Feature: domain Description: PRK09692 Location: 558696-559929 bp Feature: domain Description: PRK09692 Location: 558696-559929 bp Feature: gene Location: 559967-560402 bp Feature: gene Location: 1699666-1701096 bp Ori: QEO45250.1 Feature: domain Description: AlsT Location: 1699672-1701010 bp Feature: domain Description: AlsT Location: 1 699672-1 701 01 0 bp Feature: gene Location: 1701206-1701295 bp Feature: gene Location: 1701448-1703316 bp Ori: QEO45251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701718-1702537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 701 71 8-1 702537 bp Feature: domain Description: Intron_maturas2 Location: 1702639-1702963 bp Feature: domain Description: Intron_maturas2 Location: 1 702639-1 702963 bp Feature: domain Description: HNHc Note: nucleases Location: 1703095-1703254 bp Feature: domain Description: HNHc Note: nucleases Location: 1 703095-1 703254 bp Feature: gene Location: 1704088-1704846 bp Ori: QEO45252.1 Gene: yaaA Feature: domain Description: YaaA Location: 1704109-1704844 bp Feature: domain Description: YaaA Location: 1 7041 09-1 704844 bp Feature: gene Location: 1704961-1705812 bp Ori: QEO45253.1 Feature: domain Description: PRK11449 Location: 1705021-1705783 bp Feature: domain Description: PRK1 1 449 Location: 1 705021 -1 705783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaG (COG0358), PRK05658 (RNA polymerase sigma factor RpoD; Validated), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09692 (Integrase; provisional), AlsT (COG1115), YaaA (COG3022), PRK11449 (metal-dependent hydrolase)