myRT

myRT report for GCA_008375315.1_ASM837531v1

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Seq: CP032507.1 Ectothiorhodospiraceae bacterium BW-2 chromosome, complete genome (4074140 bp)
Overview 1 RT 1: 138870-142877 bp 2 RT 2: 239012-246175 bp 3 RT 3: 253806-259136 bp 4 RT 4: 867211-870360 bp 5 RT 5: 990963-1000000 bp 6 RT 6: 2184589-2191052 bp 7 RT 7: 2488057-2497000 bp 8 RT 8: 3980957-3985069 bp Neighborhood of RT #1 [138870, 142945] InsE Tra5 RVT_N RVT-GII UPF0227 MhpC Nudix_Hydrolase_31 Neighborhood of RT #2 [239012, 246186] TIGR03986 clan_AA_DTGF CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III TnpB_IS66 Neighborhood of RT #3 [253806, 259136] dinG PRK09010 RVT-UG2 PcfJ Neighborhood of RT #4 [867211, 870374] YfmG RVT-DGRs Avd_like YfmG Neighborhood of RT #5 [990963, 1000011] AAA-ATPase_like RVT-DGRs Peptidase_C14 AAA-ATPase_like YfmG RVT-DGRs Avd_like Peptidase_C14 PEGA Peptidase_M14NE-CP-C_like YfmG Neighborhood of RT #6 [2184589, 2191052] MarR_EPS COG1340 IncA RVT-UG1 nitrilase COG3950 Neighborhood of RT #7 [2488057, 2497224] PKS_AT PKS_AT PKS_AT DUF1566 Avd_like RVT-DGRs DUF1566 PDDEXK_2 Neighborhood of RT #8 [3980957, 3985101] DDE_Tnp_1_assoc DUF1566 RVT-DGRs DUF1566 Avd_like Feature: gene Location: 138870-139313 bp Ori: QEP41767.1 Feature: domain Description: InsE Location: 138969-139245 bp Feature: domain Description: InsE Location: 1 38969-1 39245 bp Feature: gene Location: 139310-140359 bp Ori: QEP41768.1 Feature: domain Description: Tra5 Location: 139553-140165 bp Feature: domain Description: Tra5 Location: 1 39553-1 401 65 bp Feature: gene Location: 140720-141208 bp Ori: QEP41769.1 Feature: domain Description: RVT_N Location: 140780-140927 bp Feature: domain Description: RVT_N Location: 1 40780-1 40927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140975-141188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40975-1 41 1 88 bp Feature: gene Location: 141623-142117 bp Ori: QEP41770.1 Feature: domain Description: UPF0227 Location: 141629-141902 bp Feature: domain Description: UPF0227 Location: 1 41 629-1 41 902 bp Feature: domain Description: MhpC Location: 141932-142046 bp Feature: domain Description: MhpC Location: 1 41 932-1 42046 bp Feature: gene Location: 142214-142945 bp Ori: QEP41771.1 Feature: domain Description: Nudix_Hydrolase_31 Location: 142586-142877 bp Feature: domain Description: Nudix_Hydrolase_31 Location: 1 42586-1 42877 bp Feature: gene Location: 239012-241111 bp Ori: QEP41847.1 Feature: domain Description: TIGR03986 Location: 239108-240689 bp Feature: domain Description: TIGR03986 Location: 2391 08-240689 bp Feature: gene Location: 241113-241517 bp Ori: QEP41848.1 Feature: domain Description: clan_AA_DTGF Location: 241137-241443 bp Feature: domain Description: clan_AA_DTGF Location: 241 1 37-241 443 bp Feature: gene Location: 241524-244166 bp Ori: QEP41849.1 Gene: cas1 Feature: domain Description: CRISPR_Cas6 Location: 241959-242286 bp Feature: domain Description: CRISPR_Cas6 Location: 241 959-242286 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 242505-243111 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 242505-2431 1 1 bp Feature: domain Description: Cas1_I-II-III Location: 243186-244116 bp Feature: domain Description: Cas1 _I-II-III Location: 2431 86-2441 1 6 bp Feature: gene Location: 245492-245878 bp Feature: gene Location: 245875-246186 bp Ori: QEP41851.1 Feature: domain Description: TnpB_IS66 Location: 245905-246175 bp Feature: domain Description: TnpB_IS66 Location: 245905-2461 75 bp Feature: gene Location: 253806-256034 bp Ori: QEP41861.1 Feature: domain Description: dinG Location: 253941-255990 bp Feature: domain Description: dinG Location: 253941 -255990 bp Feature: gene Location: 256035-256520 bp Ori: QEP41862.1 Gene: ssb Feature: domain Description: PRK09010 Location: 256041-256392 bp Feature: domain Description: PRK0901 0 Location: 256041 -256392 bp Feature: gene Location: 256669-258012 bp Ori: QEP41863.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 256930-257719 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 256930-25771 9 bp Feature: gene Location: 258018-258707 bp Ori: QEP41864.1 Feature: domain Description: PcfJ Location: 258258-258666 bp Feature: domain Description: PcfJ Location: 258258-258666 bp Feature: gene Location: 258795-259136 bp Feature: gene Location: 867211-867450 bp Feature: gene Location: 867470-867820 bp Ori: QEP42378.1 Feature: domain Description: YfmG Location: 867674-867779 bp Feature: domain Description: YfmG Location: 867674-867779 bp Feature: gene Location: 867615-868628 bp Ori: QEP42379.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 867792-868395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 867792-868395 bp Feature: gene Location: 868642-869004 bp Ori: QEP42380.1 Gene: avd Feature: domain Description: Avd_like Location: 868690-868984 bp Feature: domain Description: Avd_like Location: 868690-868984 bp Feature: gene Location: 869124-870374 bp Ori: QEP42381.1 Feature: domain Description: YfmG Location: 869646-870360 bp Feature: domain Description: YfmG Location: 869646-870360 bp Feature: gene Location: 990963-991169 bp Feature: gene Location: 991258-993042 bp Ori: QEP45054.1 Feature: domain Description: AAA-ATPase_like Location: 991270-992170 bp Feature: domain Description: AAA-ATPase_like Location: 991 270-9921 70 bp Feature: gene Location: 993038-993424 bp Ori: QEP42485.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 993248-993332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 993248-993332 bp Feature: gene Location: 993458-994159 bp Ori: QEP42486.1 Feature: domain Description: Peptidase_C14 Location: 993593-994001 bp Feature: domain Description: Peptidase_C1 4 Location: 993593-994001 bp Feature: gene Location: 994250-996034 bp Ori: QEP45055.1 Feature: domain Description: AAA-ATPase_like Location: 994262-995162 bp Feature: domain Description: AAA-ATPase_like Location: 994262-9951 62 bp Feature: gene Location: 996030-996428 bp Ori: QEP42487.1 Feature: domain Description: YfmG Location: 996057-996180 bp Feature: domain Description: YfmG Location: 996057-9961 80 bp Feature: gene Location: 996406-997425 bp Ori: QEP42488.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 996613-997216 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99661 3-99721 6 bp Feature: gene Location: 997422-997766 bp Ori: QEP42489.1 Gene: avd Feature: domain Description: Avd_like Location: 997461-997755 bp Feature: domain Description: Avd_like Location: 997461 -997755 bp Feature: gene Location: 997912-1000011 bp Ori: QEP42490.1 Feature: domain Description: Peptidase_C14 Location: 998047-998530 bp Feature: domain Description: Peptidase_C1 4 Location: 998047-998530 bp Feature: domain Description: PEGA Location: 998806-998983 bp Feature: domain Description: PEGA Location: 998806-998983 bp Feature: domain Description: Peptidase_M14NE-CP-C_like Location: 999121-999220 bp Feature: domain Description: Peptidase_M1 4NE-CP-C_like Location: 9991 21 -999220 bp Feature: domain Description: YfmG Location: 999247-1000000 bp Feature: domain Description: YfmG Location: 999247-1 000000 bp Feature: gene Location: 2184589-2184936 bp Ori: QEP45129.1 Feature: domain Description: MarR_EPS Location: 2184616-2184922 bp Feature: domain Description: MarR_EPS Location: 21 8461 6-21 84922 bp Feature: gene Location: 2185021-2185368 bp Ori: QEP43514.1 Feature: domain Description: COG1340 Location: 2185054-2185117 bp Feature: domain Description: COG1 340 Location: 21 85054-21 851 1 7 bp Feature: domain Description: IncA Location: 2185120-2185321 bp Feature: domain Description: IncA Location: 21 851 20-21 85321 bp Feature: gene Location: 2185353-2189276 bp Ori: QEP43515.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2186055-2186586 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 21 86055-21 86586 bp Feature: domain Description: nitrilase Location: 2188623-2189190 bp Feature: domain Description: nitrilase Location: 21 88623-21 891 90 bp Feature: gene Location: 2189335-2190558 bp Ori: QEP43516.1 Feature: domain Description: COG3950 Location: 2189338-2190322 bp Feature: domain Description: COG3950 Location: 21 89338-21 90322 bp Feature: gene Location: 2190555-2191052 bp Feature: gene Location: 2488057-2493216 bp Ori: QEP43794.1 Feature: domain Description: PKS_AT Location: 2491411-2491588 bp Feature: domain Description: PKS_AT Location: 2491 41 1 -2491 588 bp Feature: domain Description: PKS_AT Location: 2491702-2491879 bp Feature: domain Description: PKS_AT Location: 2491 702-2491 879 bp Feature: domain Description: PKS_AT Location: 2491993-2492170 bp Feature: domain Description: PKS_AT Location: 2491 993-24921 70 bp Feature: domain Description: DUF1566 Location: 2492797-2493205 bp Feature: domain Description: DUF1 566 Location: 2492797-2493205 bp Feature: gene Location: 2493107-2493619 bp Ori: QEP43795.1 Feature: domain Description: Avd_like Location: 2493266-2493581 bp Feature: domain Description: Avd_like Location: 2493266-2493581 bp Feature: gene Location: 2493765-2495360 bp Ori: QEP43796.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2494083-2494812 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2494083-249481 2 bp Feature: gene Location: 2495342-2495863 bp Ori: QEP43797.1 Feature: domain Description: DUF1566 Location: 2495471-2495852 bp Feature: domain Description: DUF1 566 Location: 2495471 -2495852 bp Feature: gene Location: 2496241-2497224 bp Ori: QEP43798.1 Feature: domain Description: PDDEXK_2 Location: 2496262-2497000 bp Feature: domain Description: PDDEXK_2 Location: 2496262-2497000 bp Feature: gene Location: 3980957-3982201 bp Ori: QEP44930.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 3980987-3981197 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 3980987-3981 1 97 bp Feature: gene Location: 3982303-3982875 bp Ori: QEP44931.1 Feature: domain Description: DUF1566 Location: 3982426-3982798 bp Feature: domain Description: DUF1 566 Location: 3982426-3982798 bp Feature: gene Location: 3982878-3984440 bp Ori: QEP44932.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3983076-3983781 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3983076-3983781 bp Feature: gene Location: 3984434-3984730 bp Ori: QEP44933.1 Feature: domain Description: DUF1566 Location: 3984593-3984710 bp Feature: domain Description: DUF1 566 Location: 3984593-398471 0 bp Feature: gene Location: 3984730-3985101 bp Ori: QEP44934.1 Feature: domain Description: Avd_like Location: 3984757-3985069 bp Feature: domain Description: Avd_like Location: 3984757-3985069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT_N (pfam13655), RVT-GII, UPF0227 (pfam05728), MhpC (COG0596), Nudix_Hydrolase_31 (cd04690), TIGR03986 (CRISPR-associated protein), clan_AA_DTGF, CRISPR_Cas6 (pfam10040)
RVT-CRISPR, Cas1_I-II-III (cl00656), TnpB_IS66 (pfam05717), dinG (PRK11747), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-UG2, PcfJ (pfam14284), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)
AAA-ATPase_like (pfam09820), Peptidase_C14 (pfam00656), PEGA (pfam08308), Peptidase_M14NE-CP-C_like (cl21470), MarR_EPS (TIGR04176), COG1340 (Uncharacterized coiled-coil protein, contains DUF342 domain ), IncA, RVT-UG1, nitrilase (cl11424), COG3950 (Predicted ATP-binding protein involved in virulence )
PKS_AT (smart00827), DUF1566 (pfam07603), PDDEXK_2 (pfam12784), DDE_Tnp_1_assoc (pfam13808)