myRT

myRT report for GCA_008632415.1_ASM863241v1

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Seq: CP043935.1 Klebsiella pneumoniae strain 555 plasmid pSCKLB555-3, complete sequence (179179 bp)
Overview 1 RT 1: 102819-106915 bp Neighborhood of RT #1 [102819, 107040] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 102819-103049 bp Feature: gene Location: 103312-103569 bp Feature: gene Location: 104449-106116 bp Ori: QER51500.1 Gene: ltrA Feature: domain Description: RVT_N Location: 104497-104734 bp Feature: domain Description: RVT_N Location: 1 04497-1 04734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104785-105427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04785-1 05427 bp Feature: domain Description: GIIM Note: maturase Location: 105478-105712 bp Feature: domain Description: GIIM Note: maturase Location: 1 05478-1 0571 2 bp Feature: domain Description: HNHc Note: nucleases Location: 105922-106081 bp Feature: domain Description: HNHc Note: nucleases Location: 1 05922-1 06081 bp Feature: gene Location: 106430-106621 bp Feature: gene Location: 106618-107040 bp Ori: QER51502.1 Feature: domain Description: DUF1380 Location: 106621-106915 bp Feature: domain Description: DUF1 380 Location: 1 06621 -1 0691 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP043932.1 Klebsiella pneumoniae strain 555 chromosome, complete genome (5278199 bp)
Overview 1 RT 1: 226079-230416 bp 2 RT 2: 927262-930087 bp 3 RT 3: 4604859-4611065 bp 4 RT 4: 4920598-4925463 bp Neighborhood of RT #1 [226079, 230445] Toxin_GhoT_OrtT RVT-GII MhpC ALDH_SaliADH Neighborhood of RT #2 [927262, 930098] PRK10276 RVT-GII group_II_RT_mat DinI Neighborhood of RT #3 [4604859, 4611065] COG4643 COG5519 Ogr_Delta RVT-Retrons Neighborhood of RT #4 [4920598, 4925477] dacD RVT-GII PRK10016 YccC Feature: gene Location: 226079-226252 bp Ori: QER46290.1 Feature: domain Description: Toxin_GhoT_OrtT Location: 226091-226250 bp Feature: domain Description: Toxin_GhoT_OrtT Location: 2 2 6091-2 2 62 50 bp Feature: gene Location: 226433-226684 bp Feature: gene Location: 226684-228167 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227086-227455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 7086-2 2 7455 bp Feature: gene Location: 228249-228998 bp Ori: QER46292.1 Feature: domain Description: MhpC Location: 228261-228990 bp Feature: domain Description: MhpC Location: 2 2 82 61-2 2 8990 bp Feature: gene Location: 229012-230445 bp Ori: QER46293.1 Feature: domain Description: ALDH_SaliADH Location: 229147-230416 bp Feature: domain Description: ALDH_SaliADH Location: 2 2 9147-2 30416 bp Feature: gene Location: 927262-927681 bp Ori: QER46927.1 Gene: umuD Feature: domain Description: PRK10276 Location: 927265-927676 bp Feature: domain Description: PRK102 76 Location: 92 72 65-92 7676 bp Feature: gene Location: 927659-927844 bp Feature: gene Location: 927760-929238 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928159-928528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 8159-92 852 8 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 928744-929104 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 92 8744-92 9104 bp Feature: gene Location: 929238-929489 bp Feature: gene Location: 929856-930098 bp Ori: QER46930.1 Feature: domain Description: DinI Location: 929907-930087 bp Feature: domain Description: DinI Location: 92 9907-930087 bp Feature: gene Location: 4604859-4607546 bp Ori: QER50209.1 Feature: domain Description: COG4643 Location: 4604877-4605807 bp Feature: domain Description: COG4643 Location: 4604877-4605807 bp Feature: domain Description: COG5519 Location: 4605873-4607526 bp Feature: domain Description: COG5519 Location: 4605873-460752 6 bp Feature: gene Location: 4607829-4608101 bp Ori: QER50210.1 Feature: domain Description: Ogr_Delta Location: 4607853-4607988 bp Feature: domain Description: Ogr_Delta Location: 4607853-4607988 bp Feature: gene Location: 4608823-4610007 bp Ori: QER50211.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4608973-4609552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4608973-4609552 bp Feature: gene Location: 4610007-4610237 bp Feature: gene Location: 4610574-4611065 bp Feature: gene Location: 4920598-4921767 bp Ori: QER50463.1 Gene: dacD Feature: domain Description: dacD Location: 4920607-4921762 bp Feature: domain Description: dacD Location: 492 0607-492 1762 bp Feature: gene Location: 4922036-4922227 bp Feature: gene Location: 4922285-4923765 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4922684-4923053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 2 684-492 3053 bp Feature: gene Location: 4923847-4924320 bp Ori: QER50465.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 4923850-4924309 bp Feature: domain Description: PRK10016 Location: 492 3850-492 4309 bp Feature: gene Location: 4924419-4925477 bp Ori: QER50466.1 Feature: domain Description: YccC Location: 4924425-4925463 bp Feature: domain Description: YccC Location: 492 442 5-492 5463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toxin_GhoT_OrtT (pfam10753), RVT-GII, MhpC (COG0596), ALDH_SaliADH (cd07105), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), group_II_RT_mat (TIGR04416), DinI (pfam06183), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606)
RVT-Retrons, dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: CP043933.1 Klebsiella pneumoniae strain 555 plasmid pSCKLB555-1, complete sequence (247938 bp)
Overview 1 RT 1: 62020-65256 bp Neighborhood of RT #1 [62020, 65270] InsQ RVT-GII PRK10276 Feature: gene Location: 62020-62589 bp Feature: domain Description: InsQ Location: 62029-62539 bp Feature: domain Description: InsQ Location: 62029-6253 9 bp Feature: gene Location: 63033-63284 bp Feature: gene Location: 63284-64762 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64037-64373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6403 7-643 73 bp Feature: gene Location: 64678-64857 bp Feature: gene Location: 64848-65270 bp Ori: QER51108.1 Gene: umuD Feature: domain Description: PRK10276 Location: 64854-65256 bp Feature: domain Description: PRK10276 Location: 64854-65256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)