myRT

myRT report for GCA_008632555.1_ASM863255v1

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Seq: CP043946.1 Escherichia coli strain AR202.2 chromosome, complete genome (4847893 bp)
Overview 1 RT 1: 515776-519536 bp 2 RT 2: 822008-826299 bp 3 RT 3: 2828701-2834136 bp 4 RT 4: 4167770-4171147 bp 5 RT 5: 4182716-4190511 bp Neighborhood of RT #1 [515776, 519538] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822008, 826299] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2828701, 2834136] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4167770, 4171576] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [4182716, 4190618] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 515776-516515 bp Feature: domain Description: InsE Location: 515779-516118 bp Feature: domain Description: InsE Location: 51 5779-51 61 1 8 bp Feature: gene Location: 516508-516879 bp Feature: gene Location: 517188-518696 bp Ori: QER61166.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517446-518178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7446-51 81 78 bp Feature: domain Description: GIIM Note: maturase Location: 518253-518451 bp Feature: domain Description: GIIM Note: maturase Location: 51 8253-51 8451 bp Feature: gene Location: 518786-519259 bp Feature: domain Description: PHA02517 Location: 518792-519257 bp Feature: domain Description: PHA0251 7 Location: 51 8792-51 9257 bp Feature: gene Location: 519302-519538 bp Feature: domain Description: DUF1016_N Location: 519359-519536 bp Feature: domain Description: DUF1 01 6_N Location: 51 9359-51 9536 bp Feature: gene Location: 822008-823237 bp Ori: QER57691.1 Feature: domain Description: YesM Location: 822488-823229 bp Feature: domain Description: YesM Location: 822488-823229 bp Feature: gene Location: 823310-823498 bp Feature: gene Location: 823820-824341 bp Ori: QER57693.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823826-824108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823826-8241 08 bp Feature: domain Description: GIIM Note: maturase Location: 824156-824336 bp Feature: domain Description: GIIM Note: maturase Location: 8241 56-824336 bp Feature: gene Location: 824517-824908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824847-824907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824847-824907 bp Feature: gene Location: 825133-825420 bp Feature: gene Location: 825394-826299 bp Feature: gene Location: 2828701-2829440 bp Feature: domain Description: InsE Location: 2828704-2829043 bp Feature: domain Description: InsE Location: 2828704-2829043 bp Feature: gene Location: 2829433-2829804 bp Feature: gene Location: 2830113-2831621 bp Ori: QER61263.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830371-2831103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830371 -2831 1 03 bp Feature: domain Description: GIIM Note: maturase Location: 2831178-2831376 bp Feature: domain Description: GIIM Note: maturase Location: 2831 1 78-2831 376 bp Feature: gene Location: 2831711-2832184 bp Feature: domain Description: PHA02517 Location: 2831717-2832182 bp Feature: domain Description: PHA0251 7 Location: 2831 71 7-28321 82 bp Feature: gene Location: 2832226-2834136 bp Feature: gene Location: 4167770-4168027 bp Feature: gene Location: 4168110-4168597 bp Feature: domain Description: PHA02517 Location: 4168113-4168284 bp Feature: domain Description: PHA0251 7 Location: 41 681 1 3-41 68284 bp Feature: gene Location: 4168678-4170186 bp Ori: QER61320.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168936-4169668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 68936-41 69668 bp Feature: domain Description: GIIM Note: maturase Location: 4169743-4169941 bp Feature: domain Description: GIIM Note: maturase Location: 41 69743-41 69941 bp Feature: gene Location: 4170495-4170863 bp Feature: gene Location: 4170859-4171576 bp Feature: domain Description: InsE Location: 4170898-4171147 bp Feature: domain Description: InsE Location: 41 70898-41 71 1 47 bp Feature: gene Location: 4182716-4183455 bp Feature: domain Description: InsE Location: 4182719-4183058 bp Feature: domain Description: InsE Location: 41 8271 9-41 83058 bp Feature: gene Location: 4183448-4183819 bp Feature: gene Location: 4184128-4185636 bp Ori: QER61321.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4184386-4185118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 84386-41 851 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 4185193-4185391 bp Feature: domain Description: GIIM Note: maturase Location: 41 851 93-41 85391 bp Feature: gene Location: 4185726-4186199 bp Feature: domain Description: PHA02517 Location: 4185732-4186197 bp Feature: domain Description: PHA0251 7 Location: 41 85732-41 861 97 bp Feature: gene Location: 4186241-4187343 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4186250-4186502 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 86250-41 86502 bp Feature: gene Location: 4187798-4188730 bp Ori: QER60598.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4187900-4188494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 87900-41 88494 bp Feature: gene Location: 4188732-4189700 bp Feature: gene Location: 4190346-4190618 bp Ori: QER60599.1 Feature: domain Description: PRK09678 Location: 4190355-4190511 bp Feature: domain Description: PRK09678 Location: 41 90355-41 9051 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CP043947.1 Escherichia coli strain AR202.2 plasmid pMPTEM-30, complete sequence (115932 bp)
Overview 1 RT 1: 99768-102905 bp Neighborhood of RT #1 [99768, 102905] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 99768-99863 bp Feature: gene Location: 99904-100089 bp Feature: gene Location: 100067-101734 bp Ori: QER61461.1 Gene: ltrA Feature: domain Description: RVT_N Location: 100115-100352 bp Feature: domain Description: RVT_N Location: 100115-100352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100403-101045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100403-101045 bp Feature: domain Description: GIIM Note: maturase Location: 101096-101330 bp Feature: domain Description: GIIM Note: maturase Location: 101096-101330 bp Feature: domain Description: HNHc Note: nucleases Location: 101540-101699 bp Feature: domain Description: HNHc Note: nucleases Location: 101540-101699 bp Feature: gene Location: 102465-102533 bp Feature: gene Location: 102699-102905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)