myRT

myRT report for GCA_008632575.1_ASM863257v1

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Seq: CP043942.1 Escherichia coli strain AR216.2b chromosome, complete genome (4849144 bp)
Overview 1 RT 1: 515776-519536 bp 2 RT 2: 822008-826299 bp 3 RT 3: 2828701-2834136 bp 4 RT 4: 4169021-4172398 bp 5 RT 5: 4183967-4191762 bp Neighborhood of RT #1 [515776, 519538] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822008, 826299] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2828701, 2834136] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4169021, 4172827] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [4183967, 4191869] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 515776-516515 bp Feature: domain Description: InsE Location: 515779-516118 bp Feature: domain Description: InsE Location: 51 5779-51 61 1 8 bp Feature: gene Location: 516508-516879 bp Feature: gene Location: 517188-518696 bp Ori: QER65900.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517446-518178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7446-51 81 78 bp Feature: domain Description: GIIM Note: maturase Location: 518253-518451 bp Feature: domain Description: GIIM Note: maturase Location: 51 8253-51 8451 bp Feature: gene Location: 518786-519259 bp Feature: domain Description: PHA02517 Location: 518792-519257 bp Feature: domain Description: PHA0251 7 Location: 51 8792-51 9257 bp Feature: gene Location: 519302-519538 bp Feature: domain Description: DUF1016_N Location: 519359-519536 bp Feature: domain Description: DUF1 01 6_N Location: 51 9359-51 9536 bp Feature: gene Location: 822008-823237 bp Ori: QER62421.1 Feature: domain Description: YesM Location: 822488-823229 bp Feature: domain Description: YesM Location: 822488-823229 bp Feature: gene Location: 823310-823498 bp Feature: gene Location: 823820-824341 bp Ori: QER62423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823826-824108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823826-8241 08 bp Feature: domain Description: GIIM Note: maturase Location: 824156-824336 bp Feature: domain Description: GIIM Note: maturase Location: 8241 56-824336 bp Feature: gene Location: 824517-824908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824847-824907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824847-824907 bp Feature: gene Location: 825133-825420 bp Feature: gene Location: 825394-826299 bp Feature: gene Location: 2828701-2829440 bp Feature: domain Description: InsE Location: 2828704-2829043 bp Feature: domain Description: InsE Location: 2828704-2829043 bp Feature: gene Location: 2829433-2829804 bp Feature: gene Location: 2830113-2831621 bp Ori: QER65995.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830371-2831103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830371 -2831 1 03 bp Feature: domain Description: GIIM Note: maturase Location: 2831178-2831376 bp Feature: domain Description: GIIM Note: maturase Location: 2831 1 78-2831 376 bp Feature: gene Location: 2831711-2832184 bp Feature: domain Description: PHA02517 Location: 2831717-2832182 bp Feature: domain Description: PHA0251 7 Location: 2831 71 7-28321 82 bp Feature: gene Location: 2832226-2834136 bp Feature: gene Location: 4169021-4169278 bp Feature: gene Location: 4169361-4169848 bp Feature: domain Description: PHA02517 Location: 4169364-4169535 bp Feature: domain Description: PHA0251 7 Location: 41 69364-41 69535 bp Feature: gene Location: 4169929-4171437 bp Ori: QER66050.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170187-4170919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 701 87-41 7091 9 bp Feature: domain Description: GIIM Note: maturase Location: 4170994-4171192 bp Feature: domain Description: GIIM Note: maturase Location: 41 70994-41 71 1 92 bp Feature: gene Location: 4171746-4172114 bp Feature: gene Location: 4172110-4172827 bp Feature: domain Description: InsE Location: 4172149-4172398 bp Feature: domain Description: InsE Location: 41 721 49-41 72398 bp Feature: gene Location: 4183967-4184706 bp Feature: domain Description: InsE Location: 4183970-4184309 bp Feature: domain Description: InsE Location: 41 83970-41 84309 bp Feature: gene Location: 4184699-4185070 bp Feature: gene Location: 4185379-4186887 bp Ori: QER66051.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185637-4186369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 85637-41 86369 bp Feature: domain Description: GIIM Note: maturase Location: 4186444-4186642 bp Feature: domain Description: GIIM Note: maturase Location: 41 86444-41 86642 bp Feature: gene Location: 4186977-4187450 bp Feature: domain Description: PHA02517 Location: 4186983-4187448 bp Feature: domain Description: PHA0251 7 Location: 41 86983-41 87448 bp Feature: gene Location: 4187492-4188594 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4187501-4187753 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 87501 -41 87753 bp Feature: gene Location: 4189049-4189981 bp Ori: QER65333.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4189151-4189745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 891 51 -41 89745 bp Feature: gene Location: 4189983-4190951 bp Feature: gene Location: 4191597-4191869 bp Ori: QER65334.1 Feature: domain Description: PRK09678 Location: 4191606-4191762 bp Feature: domain Description: PRK09678 Location: 41 91 606-41 91 762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CP043943.1 Escherichia coli strain AR216.2b plasmid pMPTEM-30, complete sequence (115609 bp)
Overview 1 RT 1: 43642-46779 bp Neighborhood of RT #1 [43642, 46779] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 43642-43737 bp Feature: gene Location: 43778-43963 bp Feature: gene Location: 43941-45608 bp Ori: QER66132.1 Gene: ltrA Feature: domain Description: RVT_N Location: 43989-44226 bp Feature: domain Description: RVT_N Location: 43989-442 2 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44277-44919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 77-44919 bp Feature: domain Description: GIIM Note: maturase Location: 44970-45204 bp Feature: domain Description: GIIM Note: maturase Location: 44970-452 04 bp Feature: domain Description: HNHc Note: nucleases Location: 45414-45573 bp Feature: domain Description: HNHc Note: nucleases Location: 45414-45573 bp Feature: gene Location: 46339-46407 bp Feature: gene Location: 46573-46779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)