myRT

myRT report for GCA_008632615.1_ASM863261v1

Download annotations/find similar RTs

Seq: CP043939.1 Lactobacillus nenjiangensis strain SH-Y15 chromosome, complete genome (2207094 bp)
Overview 1 RT 1: 9316-19082 bp 2 RT 2: 331879-338319 bp 3 RT 3: 485164-490754 bp 4 RT 4: 780495-788466 bp 5 RT 5: 1008870-1014621 bp 6 RT 6: 1025900-1033627 bp 7 RT 7: 1043114-1047038 bp 8 RT 8: 1088752-1093402 bp 9 RT 9: 1227906-1232638 bp 10 RT 10: 1694998-1700750 bp 11 RT 11: 1846158-1854774 bp 12 RT 12: 1865587-1869259 bp 13 RT 13: 2109985-2120678 bp 14 RT 14: 2148356-2152406 bp Neighborhood of RT #1 [9316, 19084] PRK07275 rpsR RVT-GII GIIM COG4877 HflC IclR PRK06552 RVT-GII SgcC PRK07097 Neighborhood of RT #2 [331879, 338453] gltP M3B_PepF RVT-GII GIIM TroA_b HTH_ASNC Neighborhood of RT #3 [485164, 490765] HTH_GlnR-like PRK14874 RVT-GII GIIM YqgA EcCorA_ZntB-like_u2 Neighborhood of RT #4 [780495, 788471] SrmB RVT-GII GIIM AdeC Peptidase_M29 Neighborhood of RT #5 [1008870, 1014626] MucBP MucBP MucBP LPXTG_anchor RVT-GII GIIM PRK09422 DDE_Tnp_1_4 Neighborhood of RT #6 [1025900, 1033647] greA YneR RVT-GII YfhO FtsI Neighborhood of RT #7 [1043114, 1047038] NimA DHAK_reg TetR_C_8 RVT-GII GIIM Lipoprotein_Ltp Lipoprotein_Ltp Neighborhood of RT #8 [1088752, 1093617] trmD rplS RVT-GII GIIM Zn_ribbon_2 Peptidase_C69 Neighborhood of RT #9 [1227906, 1232673] DUF1304 PotE RVT-GII GIIM arsC_pI258_fam COG4832 Neighborhood of RT #10 [1694998, 1700767] PHA02517 InsE RVT-GII GIIM LysM HAD_Pase Neighborhood of RT #11 [1846158, 1854797] TopA Ldh_2 RVT-GII GIIM CydC CydD Neighborhood of RT #12 [1865587, 1869423] Beta-lactamase2 zinc_ribbon_2 RVT-GII GIIM Neighborhood of RT #13 [2109985, 2120680] addB_Gpos PRK08593 RVT-GII GIIM bac_cardiolipin Chromate_transp Neighborhood of RT #14 [2148356, 2152417] LolD PinE RVT-GII GIIM PHA02517 Feature: gene Location: 9316-9837 bp Ori: QER66408.1 Gene: ssb Feature: domain Description: PRK07275 Location: 9319-9835 bp Feature: domain Description: PRK07275 Location: 931 9-9835 bp Feature: gene Location: 9865-10107 bp Ori: QER66409.1 Gene: rpsR Feature: domain Description: rpsR Location: 9874-10099 bp Feature: domain Description: rpsR Location: 9874-1 0099 bp Feature: gene Location: 10588-11973 bp Ori: QER68316.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10909-11527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0909-1 1 527 bp Feature: domain Description: GIIM Note: maturase Location: 11584-11809 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 584-1 1 809 bp Feature: gene Location: 12152-12478 bp Ori: QER66410.1 Feature: domain Description: COG4877 Location: 12164-12290 bp Feature: domain Description: COG4877 Location: 1 21 64-1 2290 bp Feature: gene Location: 12489-13313 bp Ori: QER66411.1 Feature: domain Description: HflC Location: 12501-13269 bp Feature: domain Description: HflC Location: 1 2501 -1 3269 bp Feature: gene Location: 13421-14185 bp Ori: QER66412.1 Feature: domain Description: IclR Location: 13460-14171 bp Feature: domain Description: IclR Location: 1 3460-1 41 71 bp Feature: gene Location: 14314-14960 bp Gene: eda Feature: domain Description: PRK06552 Location: 14317-14557 bp Feature: domain Description: PRK06552 Location: 1 431 7-1 4557 bp Feature: gene Location: 15100-16397 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15421-15790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5421 -1 5790 bp Feature: gene Location: 16891-18240 bp Feature: domain Description: SgcC Location: 16900-18220 bp Feature: domain Description: SgcC Location: 1 6900-1 8220 bp Feature: gene Location: 18275-19084 bp Ori: QER66413.1 Feature: domain Description: PRK07097 Location: 18293-19082 bp Feature: domain Description: PRK07097 Location: 1 8293-1 9082 bp Feature: gene Location: 331879-333153 bp Ori: QER66705.1 Feature: domain Description: gltP Location: 331903-333145 bp Feature: domain Description: gltP Location: 331 903-3331 45 bp Feature: gene Location: 333168-334973 bp Ori: QER66706.1 Gene: pepF Feature: domain Description: M3B_PepF Location: 333282-334953 bp Feature: domain Description: M3B_PepF Location: 333282-334953 bp Feature: gene Location: 335521-336906 bp Ori: QER68325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335842-336460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335842-336460 bp Feature: domain Description: GIIM Note: maturase Location: 336517-336742 bp Feature: domain Description: GIIM Note: maturase Location: 33651 7-336742 bp Feature: gene Location: 336992-337879 bp Ori: QER66707.1 Feature: domain Description: TroA_b Location: 337091-337874 bp Feature: domain Description: TroA_b Location: 337091 -337874 bp Feature: gene Location: 338001-338453 bp Ori: QER66708.1 Feature: domain Description: HTH_ASNC Location: 338004-338319 bp Feature: domain Description: HTH_ASNC Location: 338004-33831 9 bp Feature: gene Location: 485164-485595 bp Ori: QER66843.1 Feature: domain Description: HTH_GlnR-like Location: 485218-485464 bp Feature: domain Description: HTH_GlnR-like Location: 48521 8-485464 bp Feature: gene Location: 485684-486757 bp Ori: QER66844.1 Feature: domain Description: PRK14874 Location: 485696-486716 bp Feature: domain Description: PRK1 4874 Location: 485696-48671 6 bp Feature: gene Location: 487243-488628 bp Ori: QER68332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487564-488182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487564-4881 82 bp Feature: domain Description: GIIM Note: maturase Location: 488239-488464 bp Feature: domain Description: GIIM Note: maturase Location: 488239-488464 bp Feature: gene Location: 488894-489625 bp Ori: QER66845.1 Feature: domain Description: YqgA Location: 488903-489605 bp Feature: domain Description: YqgA Location: 488903-489605 bp Feature: gene Location: 489845-490765 bp Ori: QER66846.1 Feature: domain Description: EcCorA_ZntB-like_u2 Location: 489884-490754 bp Feature: domain Description: EcCorA_ZntB-like_u2 Location: 489884-490754 bp Feature: gene Location: 780495-781823 bp Ori: QER67108.1 Feature: domain Description: SrmB Location: 780507-781797 bp Feature: domain Description: SrmB Location: 780507-781 797 bp Feature: gene Location: 782817-783161 bp Feature: gene Location: 783479-784864 bp Ori: QER68347.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783800-784418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783800-78441 8 bp Feature: domain Description: GIIM Note: maturase Location: 784475-784700 bp Feature: domain Description: GIIM Note: maturase Location: 784475-784700 bp Feature: gene Location: 785361-787025 bp Ori: QER67110.1 Gene: ade Feature: domain Description: AdeC Location: 785376-787017 bp Feature: domain Description: AdeC Location: 785376-78701 7 bp Feature: gene Location: 787236-788471 bp Feature: domain Description: Peptidase_M29 Location: 787257-788466 bp Feature: domain Description: Peptidase_M29 Location: 787257-788466 bp Feature: gene Location: 1008870-1009739 bp Ori: QER67301.1 Feature: domain Description: MucBP Location: 1008882-1008993 bp Feature: domain Description: MucBP Location: 1 008882-1 008993 bp Feature: domain Description: MucBP Location: 1009194-1009338 bp Feature: domain Description: MucBP Location: 1 0091 94-1 009338 bp Feature: domain Description: MucBP Location: 1009356-1009521 bp Feature: domain Description: MucBP Location: 1 009356-1 009521 bp Feature: domain Description: LPXTG_anchor Location: 1009620-1009725 bp Feature: domain Description: LPXTG_anchor Location: 1 009620-1 009725 bp Feature: gene Location: 1009758-1009961 bp Feature: gene Location: 1010303-1011688 bp Ori: QER68368.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010624-1011242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 0624-1 01 1 242 bp Feature: domain Description: GIIM Note: maturase Location: 1011299-1011524 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 1 299-1 01 1 524 bp Feature: gene Location: 1011891-1012910 bp Ori: QER67303.1 Gene: adhP Feature: domain Description: PRK09422 Location: 1011894-1012899 bp Feature: domain Description: PRK09422 Location: 1 01 1 894-1 01 2899 bp Feature: gene Location: 1013322-1014626 bp Ori: QER67304.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1013349-1014621 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 01 3349-1 01 4621 bp Feature: gene Location: 1025900-1026379 bp Ori: QER67315.1 Gene: greA Feature: domain Description: greA Location: 1025912-1026374 bp Feature: domain Description: greA Location: 1 02591 2-1 026374 bp Feature: gene Location: 1026485-1026793 bp Ori: QER67316.1 Feature: domain Description: YneR Location: 1026488-1026773 bp Feature: domain Description: YneR Location: 1 026488-1 026773 bp Feature: gene Location: 1027281-1028665 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027602-1027992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 027602-1 027992 bp Feature: gene Location: 1028754-1031312 bp Ori: QER68370.1 Feature: domain Description: YfhO Location: 1028757-1031259 bp Feature: domain Description: YfhO Location: 1 028757-1 031 259 bp Feature: gene Location: 1031593-1033647 bp Ori: QER68371.1 Feature: domain Description: FtsI Location: 1031611-1033627 bp Feature: domain Description: FtsI Location: 1 031 61 1 -1 033627 bp Feature: gene Location: 1043114-1043362 bp Ori: QER67330.1 Feature: domain Description: NimA Location: 1043126-1043333 bp Feature: domain Description: NimA Location: 1 0431 26-1 043333 bp Feature: gene Location: 1043387-1044013 bp Ori: QER67331.1 Feature: domain Description: DHAK_reg Location: 1043426-1043570 bp Feature: domain Description: DHAK_reg Location: 1 043426-1 043570 bp Feature: domain Description: TetR_C_8 Location: 1043678-1043960 bp Feature: domain Description: TetR_C_8 Location: 1 043678-1 043960 bp Feature: gene Location: 1044761-1046146 bp Ori: QER68373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045082-1045700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 045082-1 045700 bp Feature: domain Description: GIIM Note: maturase Location: 1045757-1045982 bp Feature: domain Description: GIIM Note: maturase Location: 1 045757-1 045982 bp Feature: gene Location: 1046261-1046695 bp Ori: QER68374.1 Feature: domain Description: Lipoprotein_Ltp Location: 1046399-1046534 bp Feature: domain Description: Lipoprotein_Ltp Location: 1 046399-1 046534 bp Feature: domain Description: Lipoprotein_Ltp Location: 1046546-1046687 bp Feature: domain Description: Lipoprotein_Ltp Location: 1 046546-1 046687 bp Feature: gene Location: 1046850-1047038 bp Feature: gene Location: 1088752-1089510 bp Ori: QER67376.1 Gene: trmD Feature: domain Description: trmD Location: 1088755-1089481 bp Feature: domain Description: trmD Location: 1 088755-1 089481 bp Feature: gene Location: 1089623-1089976 bp Ori: QER67377.1 Feature: domain Description: rplS Location: 1089638-1089971 bp Feature: domain Description: rplS Location: 1 089638-1 089971 bp Feature: gene Location: 1090454-1091839 bp Ori: QER68376.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090775-1091393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 090775-1 091 393 bp Feature: domain Description: GIIM Note: maturase Location: 1091450-1091675 bp Feature: domain Description: GIIM Note: maturase Location: 1 091 450-1 091 675 bp Feature: gene Location: 1091934-1092188 bp Ori: QER67378.1 Feature: domain Description: Zn_ribbon_2 Location: 1091946-1092186 bp Feature: domain Description: Zn_ribbon_2 Location: 1 091 946-1 0921 86 bp Feature: gene Location: 1092205-1093617 bp Ori: QER67379.1 Feature: domain Description: Peptidase_C69 Location: 1092232-1093402 bp Feature: domain Description: Peptidase_C69 Location: 1 092232-1 093402 bp Feature: gene Location: 1227906-1228271 bp Ori: QER67492.1 Feature: domain Description: DUF1304 Location: 1227939-1228260 bp Feature: domain Description: DUF1 304 Location: 1 227939-1 228260 bp Feature: gene Location: 1228341-1229631 bp Feature: domain Description: PotE Location: 1228362-1229214 bp Feature: domain Description: PotE Location: 1 228362-1 22921 4 bp Feature: gene Location: 1229757-1231142 bp Ori: QER68384.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230078-1230696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 230078-1 230696 bp Feature: domain Description: GIIM Note: maturase Location: 1230753-1230978 bp Feature: domain Description: GIIM Note: maturase Location: 1 230753-1 230978 bp Feature: gene Location: 1231635-1232036 bp Ori: QER67493.1 Gene: arsC Feature: domain Description: arsC_pI258_fam Location: 1231647-1232031 bp Feature: domain Description: arsC_pI258_fam Location: 1 231 647-1 232031 bp Feature: gene Location: 1232098-1232673 bp Ori: QER67494.1 Feature: domain Description: COG4832 Location: 1232107-1232638 bp Feature: domain Description: COG4832 Location: 1 2321 07-1 232638 bp Feature: gene Location: 1694998-1695840 bp Ori: QER67928.1 Feature: domain Description: PHA02517 Location: 1695013-1695829 bp Feature: domain Description: PHA0251 7 Location: 1 69501 3-1 695829 bp Feature: gene Location: 1695900-1696145 bp Ori: QER67929.1 Feature: domain Description: InsE Location: 1695912-1696140 bp Feature: domain Description: InsE Location: 1 69591 2-1 6961 40 bp Feature: gene Location: 1696557-1697855 bp Ori: QER68413.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1696791-1697409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 696791 -1 697409 bp Feature: domain Description: GIIM Note: maturase Location: 1697466-1697691 bp Feature: domain Description: GIIM Note: maturase Location: 1 697466-1 697691 bp Feature: gene Location: 1699063-1699638 bp Ori: QER67930.1 Feature: domain Description: LysM Location: 1699165-1699303 bp Feature: domain Description: LysM Location: 1 6991 65-1 699303 bp Feature: gene Location: 1699961-1700767 bp Ori: QER67931.1 Feature: domain Description: HAD_Pase Location: 1699973-1700750 bp Feature: domain Description: HAD_Pase Location: 1 699973-1 700750 bp Feature: gene Location: 1846158-1848236 bp Ori: QER68421.1 Feature: domain Description: TopA Location: 1846170-1847949 bp Feature: domain Description: TopA Location: 1 8461 70-1 847949 bp Feature: gene Location: 1848442-1849527 bp Ori: QER68060.1 Feature: domain Description: Ldh_2 Location: 1848466-1849480 bp Feature: domain Description: Ldh_2 Location: 1 848466-1 849480 bp Feature: gene Location: 1849626-1851011 bp Ori: QER68422.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849947-1850565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849947-1 850565 bp Feature: domain Description: GIIM Note: maturase Location: 1850622-1850847 bp Feature: domain Description: GIIM Note: maturase Location: 1 850622-1 850847 bp Feature: gene Location: 1851493-1853100 bp Ori: QER68061.1 Feature: domain Description: CydC Location: 1851646-1853089 bp Feature: domain Description: CydC Location: 1 851 646-1 853089 bp Feature: gene Location: 1853100-1854797 bp Feature: domain Description: CydD Location: 1853160-1854774 bp Feature: domain Description: CydD Location: 1 8531 60-1 854774 bp Feature: gene Location: 1865587-1866492 bp Ori: QER68070.1 Feature: domain Description: Beta-lactamase2 Location: 1865851-1866418 bp Feature: domain Description: Beta-lactamase2 Location: 1 865851 -1 86641 8 bp Feature: gene Location: 1866530-1867570 bp Ori: QER68071.1 Feature: domain Description: zinc_ribbon_2 Location: 1866542-1866605 bp Feature: domain Description: zinc_ribbon_2 Location: 1 866542-1 866605 bp Feature: gene Location: 1868038-1869423 bp Ori: QER68424.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868359-1868977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868359-1 868977 bp Feature: domain Description: GIIM Note: maturase Location: 1869034-1869259 bp Feature: domain Description: GIIM Note: maturase Location: 1 869034-1 869259 bp Feature: gene Location: 2109985-2113557 bp Ori: QER68261.1 Feature: domain Description: addB_Gpos Location: 2110012-2113549 bp Feature: domain Description: addB_Gpos Location: 21 1 001 2-21 1 3549 bp Feature: gene Location: 2113690-2115042 bp Ori: QER68262.1 Feature: domain Description: PRK08593 Location: 2113717-2115025 bp Feature: domain Description: PRK08593 Location: 21 1 371 7-21 1 5025 bp Feature: gene Location: 2115875-2117260 bp Ori: QER68434.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2116196-2116814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 61 96-21 1 681 4 bp Feature: domain Description: GIIM Note: maturase Location: 2116871-2117096 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 6871 -21 1 7096 bp Feature: gene Location: 2118356-2119807 bp Ori: QER68435.1 Gene: cls Feature: domain Description: bac_cardiolipin Location: 2118389-2119805 bp Feature: domain Description: bac_cardiolipin Location: 21 1 8389-21 1 9805 bp Feature: gene Location: 2120336-2120680 bp Ori: QER68263.1 Feature: domain Description: Chromate_transp Location: 2120348-2120678 bp Feature: domain Description: Chromate_transp Location: 21 20348-21 20678 bp Feature: gene Location: 2148356-2149027 bp Ori: QER68280.1 Feature: domain Description: LolD Location: 2148374-2149013 bp Feature: domain Description: LolD Location: 21 48374-21 4901 3 bp Feature: gene Location: 2149356-2149937 bp Ori: QER68281.1 Feature: domain Description: PinE Location: 2149359-2149914 bp Feature: domain Description: PinE Location: 21 49359-21 4991 4 bp Feature: gene Location: 2150073-2151458 bp Ori: QER68439.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2150394-2151012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 50394-21 51 01 2 bp Feature: domain Description: GIIM Note: maturase Location: 2151069-2151294 bp Feature: domain Description: GIIM Note: maturase Location: 21 51 069-21 51 294 bp Feature: gene Location: 2152026-2152088 bp Feature: gene Location: 2152148-2152417 bp Feature: domain Description: PHA02517 Location: 2152151-2152406 bp Feature: domain Description: PHA0251 7 Location: 21 521 51 -21 52406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07275 (single-stranded DNA-binding protein; Provisional), rpsR (PRK00391), RVT-GII, GIIM (pfam08388), COG4877 (Uncharacterized protein ), HflC (COG0330), IclR (pfam01614), PRK06552 (keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional), SgcC (COG3775), PRK07097 (gluconate 5-dehydrogenase; Provisional)
gltP (PRK11283), M3B_PepF (cd09610), TroA_b (cd01020), HTH_ASNC (smart00344), HTH_GlnR-like (cd01105), PRK14874 (aspartate-semialdehyde dehydrogenase; Provisional), YqgA (COG1811), EcCorA_ZntB-like_u2 (cd12827), SrmB (COG0513), AdeC (COG1001)
Peptidase_M29 (pfam02073), MucBP (pfam06458), LPXTG_anchor (TIGR01167), PRK09422 (ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional), DDE_Tnp_1_4 (pfam13701), greA (TIGR01462), YneR (COG4841), YfhO (pfam09586), FtsI (COG0768), NimA (COG3467)
DHAK_reg (TIGR02366), TetR_C_8 (pfam14278), Lipoprotein_Ltp (pfam07553), trmD (TIGR00088), rplS (PRK05338), Zn_ribbon_2 (pfam12674), Peptidase_C69 (pfam03577), DUF1304 (pfam06993), PotE (COG0531), arsC_pI258_fam (TIGR02691)
COG4832 (Uncharacterized protein ), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), LysM (smart00257), HAD_Pase (cd16418), TopA (COG0550), Ldh_2 (pfam02615), CydC (TIGR02868), CydD (TIGR02857), Beta-lactamase2 (pfam13354)
zinc_ribbon_2 (pfam13240), addB_Gpos (TIGR02773), PRK08593 (aspartate aminotransferase family protein), bac_cardiolipin (TIGR04265), Chromate_transp (pfam02417), LolD (COG1136), PinE (COG1961)