myRT

myRT report for GCA_008693345.1_ASM869334v1

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Seq: CP044031.1 Orientia tsutsugamushi strain Wuj/2014 chromosome, complete genome (1972387 bp)
Overview 1 RT 1: 188539-191929 bp 2 RT 2: 272078-275170 bp 3 RT 3: 549478-554145 bp 4 RT 4: 731157-734416 bp 5 RT 5: 957301-961622 bp 6 RT 6: 1019480-1022640 bp 7 RT 7: 1541420-1545135 bp 8 RT 8: 1883490-1886557 bp Neighborhood of RT #1 [188539, 191979] RVT-UNC DDE_Tnp_1_3 pheS Neighborhood of RT #2 [272078, 275190] DDE_Tnp_1_3 RVT-GII HNHc clpP Neighborhood of RT #3 [549478, 554343] PRK09165 RVT_N RVT-GII GIIM HNHc TraD Neighborhood of RT #4 [731157, 734418] INT_P4_C RVT-GII HTH_Tnp_4 Neighborhood of RT #5 [957301, 961633] RVT-GII TRX_reduct YfdV Neighborhood of RT #6 [1019480, 1022640] RVT-GII ANK ANK Neighborhood of RT #7 [1541420, 1545161] DDE_Tnp_1_3 RVT-GII HTH_Tnp_4 HPTransfase Neighborhood of RT #8 [1883490, 1886557] TraF RVT-GII Feature: gene Location: 188539-188791 bp Feature: gene Location: 188812-188983 bp Feature: gene Location: 189052-189135 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 189058-189124 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 89058-1 891 24 bp Feature: gene Location: 189717-190040 bp Feature: domain Description: DDE_Tnp_1_3 Location: 189918-190035 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 8991 8-1 90035 bp Feature: gene Location: 190945-191979 bp Ori: QES95662.1 Gene: pheS Feature: domain Description: pheS Location: 190951-191929 bp Feature: domain Description: pheS Location: 1 90951 -1 91 929 bp Feature: gene Location: 272078-272206 bp Ori: QES96778.1 Feature: domain Description: DDE_Tnp_1_3 Location: 272093-272201 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 272093-272201 bp Feature: gene Location: 272313-273184 bp Feature: gene Location: 273296-273415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273329-273416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273329-27341 6 bp Feature: gene Location: 273494-273679 bp Ori: QES95719.1 Feature: domain Description: HNHc Note: nucleases Location: 273509-273659 bp Feature: domain Description: HNHc Note: nucleases Location: 273509-273659 bp Feature: gene Location: 274570-275190 bp Ori: QES95720.1 Feature: domain Description: clpP Location: 274588-275170 bp Feature: domain Description: clpP Location: 274588-2751 70 bp Feature: gene Location: 549478-549594 bp Feature: domain Description: PRK09165 Location: 549487-549589 bp Feature: domain Description: PRK091 65 Location: 549487-549589 bp Feature: gene Location: 549623-551330 bp Feature: gene Location: 551962-553185 bp Ori: QES95866.1 Gene: ltrA Feature: domain Description: RVT_N Location: 552019-552265 bp Feature: domain Description: RVT_N Location: 55201 9-552265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552313-552958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55231 3-552958 bp Feature: domain Description: GIIM Note: maturase Location: 553030-553180 bp Feature: domain Description: GIIM Note: maturase Location: 553030-5531 80 bp Feature: gene Location: 553186-553677 bp Ori: QES95867.1 Feature: domain Description: HNHc Note: nucleases Location: 553453-553618 bp Feature: domain Description: HNHc Note: nucleases Location: 553453-55361 8 bp Feature: gene Location: 553884-554343 bp Feature: domain Description: TraD Location: 553968-554145 bp Feature: domain Description: TraD Location: 553968-5541 45 bp Feature: gene Location: 731157-731369 bp Feature: gene Location: 731659-731865 bp Feature: domain Description: INT_P4_C Location: 731662-731860 bp Feature: domain Description: INT_P4_C Location: 731 662-731 860 bp Feature: gene Location: 733065-733148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733068-733149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733068-7331 49 bp Feature: gene Location: 733256-734001 bp Feature: gene Location: 734227-734418 bp Feature: domain Description: HTH_Tnp_4 Location: 734308-734416 bp Feature: domain Description: HTH_Tnp_4 Location: 734308-73441 6 bp Feature: gene Location: 957301-957492 bp Feature: gene Location: 957501-957800 bp Feature: gene Location: 957784-958923 bp Ori: QES96130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958069-958756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958069-958756 bp Feature: gene Location: 959618-960580 bp Ori: QES96131.1 Gene: trxB Feature: domain Description: TRX_reduct Location: 959645-960566 bp Feature: domain Description: TRX_reduct Location: 959645-960566 bp Feature: gene Location: 960710-961633 bp Ori: QES96132.1 Feature: domain Description: YfdV Location: 960722-961622 bp Feature: domain Description: YfdV Location: 960722-961 622 bp Feature: gene Location: 1019480-1019788 bp Feature: gene Location: 1019901-1020224 bp Feature: gene Location: 1020249-1020467 bp Ori: QES96166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020255-1020414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020255-1 02041 4 bp Feature: gene Location: 1020826-1021749 bp Ori: QES96167.1 Feature: domain Description: ANK Location: 1020832-1021213 bp Feature: domain Description: ANK Location: 1 020832-1 021 21 3 bp Feature: domain Description: ANK Location: 1021258-1021570 bp Feature: domain Description: ANK Location: 1 021 258-1 021 570 bp Feature: gene Location: 1022308-1022640 bp Feature: gene Location: 1541420-1541602 bp Feature: gene Location: 1541746-1542495 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1541938-1542133 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 541 938-1 5421 33 bp Feature: gene Location: 1542746-1542943 bp Ori: QES96847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542755-1542938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542755-1 542938 bp Feature: gene Location: 1543539-1544361 bp Feature: domain Description: HTH_Tnp_4 Location: 1543680-1543809 bp Feature: domain Description: HTH_Tnp_4 Location: 1 543680-1 543809 bp Feature: gene Location: 1544484-1545161 bp Ori: QES96513.1 Feature: domain Description: HPTransfase Location: 1544745-1545135 bp Feature: domain Description: HPTransfase Location: 1 544745-1 5451 35 bp Feature: gene Location: 1883490-1884002 bp Feature: gene Location: 1884176-1884367 bp Ori: QES96705.1 Feature: domain Description: TraF Location: 1884194-1884350 bp Feature: domain Description: TraF Location: 1 8841 94-1 884350 bp Feature: gene Location: 1884904-1885413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884913-1885102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88491 3-1 8851 02 bp Feature: gene Location: 1885711-1886076 bp Feature: gene Location: 1886223-1886557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-UG28b/RVT-CRISPR/RVT-UG10(RVT-UNC), DDE_Tnp_1_3 (pfam13612), pheS (TIGR00468), RVT-GII, HNHc (smart00507), clpP, PRK09165 (replicative DNA helicase; Provisional), RVT_N (pfam13655), GIIM (pfam08388), TraD (pfam06412)
INT_P4_C (cd00801), HTH_Tnp_4 (pfam13613), TRX_reduct (TIGR01292), YfdV (COG0679), ANK (smart00248), HPTransfase (pfam10090), TraF (TIGR02739)