myRT

myRT report for GCA_008705175.1_ASM870517v1

Download annotations/find similar RTs

Seq: CP043998.1 Clostridium diolis strain DSM 15410 chromosome, complete genome (5940808 bp)
Overview 1 RT 1: 1063343-1067052 bp 2 RT 2: 3740708-3745464 bp 3 RT 3: 4326925-4333314 bp Neighborhood of RT #1 [1063343, 1067081] rve_2 RVT_N RVT-GII GIIM PHA02517 HTH_28 Neighborhood of RT #2 [3740708, 3745568] CE4_SmPgdA_like RVT-GII GIIM Acetyltransf_7 spoT_relA Neighborhood of RT #3 [4326925, 4333331] SCFA_trans RVT-GII GIIM Tar RimI Feature: gene Location: 1063343-1063765 bp Feature: gene Location: 1063840-1064190 bp Ori: QES72172.1 Feature: domain Description: rve_2 Location: 1064017-1064182 bp Feature: domain Description: rve_2 Location: 1 06401 7-1 0641 82 bp Feature: gene Location: 1064203-1065681 bp Ori: QES72173.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1064275-1064518 bp Feature: domain Description: RVT_N Location: 1 064275-1 06451 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064563-1065223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064563-1 065223 bp Feature: domain Description: GIIM Note: maturase Location: 1065274-1065511 bp Feature: domain Description: GIIM Note: maturase Location: 1 065274-1 06551 1 bp Feature: gene Location: 1066207-1066821 bp Ori: QES72174.1 Feature: domain Description: PHA02517 Location: 1066360-1066744 bp Feature: domain Description: PHA0251 7 Location: 1 066360-1 066744 bp Feature: gene Location: 1066923-1067081 bp Ori: QES72175.1 Feature: domain Description: HTH_28 Location: 1066950-1067052 bp Feature: domain Description: HTH_28 Location: 1 066950-1 067052 bp Feature: gene Location: 3740708-3740992 bp Feature: gene Location: 3741132-3741926 bp Ori: QES74366.1 Feature: domain Description: CE4_SmPgdA_like Location: 3741288-3741852 bp Feature: domain Description: CE4_SmPgdA_like Location: 3741 288-3741 852 bp Feature: gene Location: 3742449-3743792 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742704-3743412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742704-374341 2 bp Feature: domain Description: GIIM Note: maturase Location: 3743493-3743694 bp Feature: domain Description: GIIM Note: maturase Location: 3743493-3743694 bp Feature: gene Location: 3744467-3744937 bp Ori: QES74367.1 Feature: domain Description: Acetyltransf_7 Location: 3744617-3744866 bp Feature: domain Description: Acetyltransf_7 Location: 374461 7-3744866 bp Feature: gene Location: 3745137-3745568 bp Ori: QES74368.1 Feature: domain Description: spoT_relA Location: 3745152-3745464 bp Feature: domain Description: spoT_relA Location: 37451 52-3745464 bp Feature: gene Location: 4326925-4328250 bp Ori: QES74868.1 Feature: domain Description: SCFA_trans Location: 4326928-4328248 bp Feature: domain Description: SCFA_trans Location: 4326928-4328248 bp Feature: gene Location: 4328623-4328985 bp Feature: gene Location: 4329512-4330855 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4329767-4330475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4329767-4330475 bp Feature: domain Description: GIIM Note: maturase Location: 4330556-4330757 bp Feature: domain Description: GIIM Note: maturase Location: 4330556-4330757 bp Feature: gene Location: 4331524-4332369 bp Ori: QES74870.1 Feature: domain Description: Tar Location: 4331872-4332358 bp Feature: domain Description: Tar Location: 4331 872-4332358 bp Feature: gene Location: 4332783-4333331 bp Ori: QES74871.1 Feature: domain Description: RimI Location: 4333083-4333314 bp Feature: domain Description: RimI Location: 4333083-433331 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_28 (pfam13518), CE4_SmPgdA_like (cd10944), Acetyltransf_7 (pfam13508), spoT_relA (TIGR00691), SCFA_trans (pfam02667)
Tar (COG0840), RimI (COG0456)