myRT

myRT report for GCA_008727235.1_ASM872723v1

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Seq: CP044152.1 Shigella flexneri strain AR-0425 chromosome, complete genome (4538615 bp)
Overview 1 RT 1: 3393820-3401235 bp Neighborhood of RT #1 [3393820, 3401237] PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 3393820-3393948 bp Feature: gene Location: 3394038-3394277 bp Feature: domain Description: PHA02517 Location: 3394041-3394212 bp Feature: domain Description: PHA0251 7 Location: 3394041 -339421 2 bp Feature: gene Location: 3394869-3396392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3395142-3395874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33951 42-3395874 bp Feature: domain Description: GIIM Note: maturase Location: 3395949-3396147 bp Feature: domain Description: GIIM Note: maturase Location: 3395949-33961 47 bp Feature: gene Location: 3396569-3396955 bp Feature: domain Description: PHA02517 Location: 3396572-3396953 bp Feature: domain Description: PHA0251 7 Location: 3396572-3396953 bp Feature: gene Location: 3397146-3401237 bp Feature: domain Description: Peptidase_S6 Location: 3397272-3399444 bp Feature: domain Description: Peptidase_S6 Location: 3397272-3399444 bp Feature: domain Description: autotrans_barl Location: 3400008-3401235 bp Feature: domain Description: autotrans_barl Location: 3400008-3401 235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CP044154.1 Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence (222114 bp)
Overview 1 RT 1: 51059-54385 bp 2 RT 2: 149857-151847 bp Neighborhood of RT #1 [51059, 54399] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [149857, 151847] Tra5 RVT-GII GIIM Feature: gene Location: 51059-51706 bp Feature: domain Description: PHA02517 Location: 51062-51704 bp Feature: domain Description: PHA02 517 Location: 51062 -51704 bp Feature: gene Location: 51800-51931 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51812-51905 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51812 -51905 bp Feature: gene Location: 52408-53625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52594-53248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 594-532 48 bp Feature: domain Description: GIIM Note: maturase Location: 53326-53548 bp Feature: domain Description: GIIM Note: maturase Location: 5332 6-53548 bp Feature: gene Location: 53741-53887 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 53753-53864 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 53753-53864 bp Feature: gene Location: 53914-54399 bp Feature: domain Description: COG3547 Location: 53932-54385 bp Feature: domain Description: COG3547 Location: 53932 -54385 bp Feature: gene Location: 149857-150057 bp Feature: domain Description: Tra5 Location: 149866-150040 bp Feature: domain Description: Tra5 Location: 149866-150040 bp Feature: gene Location: 150070-150225 bp Feature: gene Location: 150322-150873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150370-150865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150370-150865 bp Feature: gene Location: 150926-151252 bp Feature: domain Description: GIIM Note: maturase Location: 150959-151178 bp Feature: domain Description: GIIM Note: maturase Location: 150959-151178 bp Feature: gene Location: 151605-151847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), Tra5 (COG2801)