myRT

myRT report for GCA_008727255.1_ASM872725v1

Download annotations/find similar RTs

Seq: CP044155.1 Shigella flexneri strain AR-0424 chromosome, complete genome (4593360 bp)
Overview 1 RT 1: 1321108-1328483 bp 2 RT 2: 3355124-3358959 bp 3 RT 3: 3919389-3923169 bp 4 RT 4: 4268581-4271546 bp Neighborhood of RT #1 [1321108, 1328548] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [3355124, 3359024] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3919389, 3923177] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Neighborhood of RT #4 [4268581, 4271546] DUF1233 PHA02517 RVT-GII GIIM Feature: gene Location: 1321108-1325226 bp Feature: domain Description: ESPR Location: 1321111-1321180 bp Feature: domain Description: ESPR Location: 1 321 1 1 1 -1 321 1 80 bp Feature: domain Description: Peptidase_S6 Location: 1321261-1323433 bp Feature: domain Description: Peptidase_S6 Location: 1 321 261 -1 323433 bp Feature: domain Description: autotrans_barl Location: 1323997-1325224 bp Feature: domain Description: autotrans_barl Location: 1 323997-1 325224 bp Feature: gene Location: 1325391-1325777 bp Feature: domain Description: PHA02517 Location: 1325394-1325775 bp Feature: domain Description: PHA0251 7 Location: 1 325394-1 325775 bp Feature: gene Location: 1325954-1327477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1326227-1326959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 326227-1 326959 bp Feature: domain Description: GIIM Note: maturase Location: 1327034-1327232 bp Feature: domain Description: GIIM Note: maturase Location: 1 327034-1 327232 bp Feature: gene Location: 1327431-1327856 bp Feature: gene Location: 1328069-1328548 bp Feature: domain Description: PHA02517 Location: 1328129-1328483 bp Feature: domain Description: PHA0251 7 Location: 1 3281 29-1 328483 bp Feature: gene Location: 3355124-3355837 bp Feature: domain Description: PHA02517 Location: 3355142-3355826 bp Feature: domain Description: PHA0251 7 Location: 33551 42-3355826 bp Feature: gene Location: 3356107-3356553 bp Feature: domain Description: PHA02517 Location: 3356110-3356551 bp Feature: domain Description: PHA0251 7 Location: 33561 1 0-3356551 bp Feature: gene Location: 3356670-3358193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356943-3357675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356943-3357675 bp Feature: domain Description: GIIM Note: maturase Location: 3357750-3357948 bp Feature: domain Description: GIIM Note: maturase Location: 3357750-3357948 bp Feature: gene Location: 3358147-3358572 bp Feature: gene Location: 3358785-3359024 bp Feature: domain Description: PHA02517 Location: 3358788-3358959 bp Feature: domain Description: PHA0251 7 Location: 3358788-3358959 bp Feature: gene Location: 3919389-3919532 bp Feature: gene Location: 3919636-3920118 bp Feature: domain Description: PHA02517 Location: 3919699-3920053 bp Feature: domain Description: PHA0251 7 Location: 391 9699-3920053 bp Feature: gene Location: 3920710-3922233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3920983-3921715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3920983-3921 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 3921790-3921988 bp Feature: domain Description: GIIM Note: maturase Location: 3921 790-3921 988 bp Feature: gene Location: 3922410-3922796 bp Feature: domain Description: PHA02517 Location: 3922413-3922794 bp Feature: domain Description: PHA0251 7 Location: 392241 3-3922794 bp Feature: gene Location: 3922836-3923177 bp Feature: domain Description: Inovirus_Gp2 Location: 3922905-3923169 bp Feature: domain Description: Inovirus_Gp2 Location: 3922905-39231 69 bp Feature: gene Location: 4268581-4268748 bp Feature: domain Description: DUF1233 Location: 4268590-4268740 bp Feature: domain Description: DUF1 233 Location: 4268590-4268740 bp Feature: gene Location: 4268796-4269242 bp Feature: domain Description: PHA02517 Location: 4268799-4269240 bp Feature: domain Description: PHA0251 7 Location: 4268799-4269240 bp Feature: gene Location: 4269359-4270882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4269632-4270364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4269632-4270364 bp Feature: domain Description: GIIM Note: maturase Location: 4270439-4270637 bp Feature: domain Description: GIIM Note: maturase Location: 4270439-4270637 bp Feature: gene Location: 4270906-4271181 bp Feature: gene Location: 4271175-4271546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), DUF1233 (pfam06806)

Seq: CP044157.1 Shigella flexneri strain AR-0424 plasmid pAR-0424-2, complete sequence (226601 bp)
Overview 1 RT 1: 31803-35129 bp 2 RT 2: 69222-72536 bp 3 RT 3: 131709-136372 bp 4 RT 4: 217134-220841 bp Neighborhood of RT #1 [31803, 35143] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [69222, 72601] PRK09413 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [131709, 136374] PAP2_acid_phosphatase Tra5 RVT-GII group_II_RT_mat ushA Neighborhood of RT #4 [217134, 220864] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 31803-32450 bp Feature: domain Description: PHA02517 Location: 31806-32448 bp Feature: domain Description: PHA02 517 Location: 31806-32 448 bp Feature: gene Location: 32544-32675 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32556-32649 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 556-32 649 bp Feature: gene Location: 33152-34369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33338-33992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33338-33992 bp Feature: domain Description: GIIM Note: maturase Location: 34070-34292 bp Feature: domain Description: GIIM Note: maturase Location: 34070-342 92 bp Feature: gene Location: 34485-34631 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 34497-34608 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 34497-34608 bp Feature: gene Location: 34658-35143 bp Feature: domain Description: COG3547 Location: 34676-35129 bp Feature: domain Description: COG3547 Location: 34676-3512 9 bp Feature: gene Location: 69222-69587 bp Feature: domain Description: PRK09413 Location: 69225-69585 bp Feature: domain Description: PRK09413 Location: 692 2 5-69585 bp Feature: gene Location: 69789-69974 bp Feature: gene Location: 70061-71584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70334-71066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70334-71066 bp Feature: domain Description: GIIM Note: maturase Location: 71141-71339 bp Feature: domain Description: GIIM Note: maturase Location: 71141-71339 bp Feature: gene Location: 71538-71963 bp Feature: gene Location: 72176-72601 bp Feature: domain Description: PHA02517 Location: 72200-72536 bp Feature: domain Description: PHA02 517 Location: 72 2 00-72 536 bp Feature: gene Location: 131709-132458 bp Feature: domain Description: PAP2_acid_phosphatase Location: 131784-132438 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 131784-132 438 bp Feature: gene Location: 132854-133054 bp Feature: domain Description: Tra5 Location: 132863-133037 bp Feature: domain Description: Tra5 Location: 132 863-133037 bp Feature: gene Location: 133067-134248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133367-133760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133367-133760 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 133862-134144 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 133862 -134144 bp Feature: gene Location: 134601-134843 bp Feature: gene Location: 134755-136374 bp Feature: domain Description: ushA Location: 134770-136372 bp Feature: domain Description: ushA Location: 134770-136372 bp Feature: gene Location: 217134-217262 bp Feature: gene Location: 217348-217587 bp Feature: domain Description: PHA02517 Location: 217351-217522 bp Feature: domain Description: PHA02 517 Location: 2 17351-2 1752 2 bp Feature: gene Location: 218179-219702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218452-219184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 18452 -2 19184 bp Feature: domain Description: GIIM Note: maturase Location: 219259-219457 bp Feature: domain Description: GIIM Note: maturase Location: 2 192 59-2 19457 bp Feature: gene Location: 219819-220388 bp Feature: domain Description: PHA02517 Location: 219822-220227 bp Feature: domain Description: PHA02 517 Location: 2 1982 2 -2 2 02 2 7 bp Feature: gene Location: 220505-220864 bp Feature: domain Description: DDE_Tnp_IS66 Location: 220514-220709 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 0514-2 2 0709 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 220733-220841 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 2 0733-2 2 0841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PRK09413 (IS2 repressor TnpA; Reviewed), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), group_II_RT_mat (TIGR04416)
ushA (PRK09558)