myRT

myRT report for GCA_008727275.1_ASM872727v1

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Seq: CP044158.1 Shigella flexneri strain AR-0423 chromosome, complete genome (4646629 bp)
Overview 1 RT 1: 1336303-1339811 bp 2 RT 2: 3355162-3362536 bp Neighborhood of RT #1 [1336303, 1339819] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Neighborhood of RT #2 [3355162, 3362601] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1336303-1336431 bp Feature: gene Location: 1336479-1336760 bp Feature: domain Description: PHA02517 Location: 1336485-1336695 bp Feature: domain Description: PHA0251 7 Location: 1 336485-1 336695 bp Feature: gene Location: 1337352-1338875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1337625-1338357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 337625-1 338357 bp Feature: domain Description: GIIM Note: maturase Location: 1338432-1338630 bp Feature: domain Description: GIIM Note: maturase Location: 1 338432-1 338630 bp Feature: gene Location: 1339052-1339438 bp Feature: domain Description: PHA02517 Location: 1339055-1339436 bp Feature: domain Description: PHA0251 7 Location: 1 339055-1 339436 bp Feature: gene Location: 1339478-1339819 bp Feature: domain Description: Inovirus_Gp2 Location: 1339547-1339811 bp Feature: domain Description: Inovirus_Gp2 Location: 1 339547-1 33981 1 bp Feature: gene Location: 3355162-3359253 bp Feature: domain Description: Peptidase_S6 Location: 3355288-3357460 bp Feature: domain Description: Peptidase_S6 Location: 3355288-3357460 bp Feature: domain Description: autotrans_barl Location: 3358024-3359251 bp Feature: domain Description: autotrans_barl Location: 3358024-3359251 bp Feature: gene Location: 3359444-3359830 bp Feature: domain Description: PHA02517 Location: 3359447-3359828 bp Feature: domain Description: PHA0251 7 Location: 3359447-3359828 bp Feature: gene Location: 3360007-3361530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360280-3361012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360280-3361 01 2 bp Feature: domain Description: GIIM Note: maturase Location: 3361087-3361285 bp Feature: domain Description: GIIM Note: maturase Location: 3361 087-3361 285 bp Feature: gene Location: 3361484-3361909 bp Feature: gene Location: 3362122-3362601 bp Feature: domain Description: PHA02517 Location: 3362182-3362536 bp Feature: domain Description: PHA0251 7 Location: 33621 82-3362536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CP044160.1 Shigella flexneri strain AR-0423 plasmid pAR-0423-2, complete sequence (146462 bp)
Overview 1 RT 1: 42261-44914 bp 2 RT 2: 63482-67044 bp 3 RT 3: 91706-94407 bp Neighborhood of RT #1 [42261, 44914] COG3547 RVT-GII GIIM Neighborhood of RT #2 [63482, 67067] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #3 [91706, 94427] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 42261-42746 bp Feature: domain Description: COG3547 Location: 42279-42732 bp Feature: domain Description: COG3547 Location: 42 2 79-42 732 bp Feature: gene Location: 42842-43009 bp Feature: gene Location: 43035-44252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43221-43875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 2 1-43875 bp Feature: domain Description: GIIM Note: maturase Location: 43953-44175 bp Feature: domain Description: GIIM Note: maturase Location: 43953-44175 bp Feature: gene Location: 44263-44646 bp Feature: gene Location: 44720-44914 bp Feature: gene Location: 63482-63610 bp Feature: gene Location: 63696-63935 bp Feature: domain Description: PHA02517 Location: 63699-63870 bp Feature: domain Description: PHA02 517 Location: 63699-63870 bp Feature: gene Location: 64527-66050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64800-65532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64800-65532 bp Feature: domain Description: GIIM Note: maturase Location: 65607-65805 bp Feature: domain Description: GIIM Note: maturase Location: 65607-65805 bp Feature: gene Location: 66227-66613 bp Feature: domain Description: PHA02517 Location: 66230-66611 bp Feature: domain Description: PHA02 517 Location: 662 30-66611 bp Feature: gene Location: 66579-67067 bp Feature: domain Description: DDE_Tnp_IS66 Location: 66645-66912 bp Feature: domain Description: DDE_Tnp_IS66 Location: 66645-66912 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 66936-67044 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 66936-67044 bp Feature: gene Location: 91706-91861 bp Feature: gene Location: 91887-92258 bp Feature: domain Description: GIIM Note: maturase Location: 91965-92184 bp Feature: domain Description: GIIM Note: maturase Location: 91965-92 184 bp Feature: gene Location: 92266-93069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92566-93061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 566-93061 bp Feature: gene Location: 93082-93282 bp Feature: domain Description: Tra5 Location: 93091-93265 bp Feature: domain Description: Tra5 Location: 93091-932 65 bp Feature: gene Location: 93678-94427 bp Feature: domain Description: PAP2_acid_phosphatase Location: 93753-94407 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 93753-94407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)