myRT

myRT report for GCA_008728395.1_ASM872839v1

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Seq: CP043529.1 Bacteroides vulgatus strain VIC01 chromosome, complete genome (5010342 bp)
Overview 1 RT 1: 411104-422255 bp 2 RT 2: 1420960-1429195 bp 3 RT 3: 2102105-2112448 bp 4 RT 4: 4001303-4005370 bp 5 RT 5: 4918353-4925318 bp Neighborhood of RT #1 [411104, 422255] Bac_Flav_CT_J RVT-GII matK HNHc DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Neighborhood of RT #2 [1420960, 1429455] ATPase_2 RVT-UG3 RVT-UG8 Glyco_hydro_127 Neighborhood of RT #3 [2102105, 2112448] DEXXQc_Upf1-like DEXXQc_Upf1-like KOG1805 PIN_VapC_PhoHL-ATPase PRK00087 PRK00087 RVT-AbiP2 HTH_26 Neighborhood of RT #4 [4001303, 4005429] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Neighborhood of RT #5 [4918353, 4925318] UvrD UvrD UvrD RVT-Retrons Feature: gene Location: 411104-412108 bp Ori: QEW34881.1 Feature: domain Description: Bac_Flav_CT_J Location: 411110-412079 bp Feature: domain Description: Bac_Flav_CT_J Location: 41 1 1 1 0-41 2079 bp Feature: gene Location: 412113-412649 bp Feature: gene Location: 412642-414477 bp Ori: QEW34883.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412936-413758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 2936-41 3758 bp Feature: domain Description: matK Location: 413935-414148 bp Feature: domain Description: matK Location: 41 3935-41 41 48 bp Feature: domain Description: HNHc Note: nucleases Location: 414310-414451 bp Feature: domain Description: HNHc Note: nucleases Location: 41 431 0-41 4451 bp Feature: gene Location: 414879-415019 bp Feature: gene Location: 414977-415294 bp Feature: gene Location: 415249-415629 bp Ori: QEW34886.1 Feature: domain Description: DUF3876 Location: 415333-415594 bp Feature: domain Description: DUF3876 Location: 41 5333-41 5594 bp Feature: gene Location: 415664-418180 bp Ori: QEW34887.1 Gene: virB4_1 Feature: domain Description: Bac_Flav_CT_G Location: 415667-418151 bp Feature: domain Description: Bac_Flav_CT_G Location: 41 5667-41 81 51 bp Feature: gene Location: 418566-420383 bp Ori: QEW34888.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418830-419652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8830-41 9652 bp Feature: domain Description: Intron_maturas2 Location: 419727-420054 bp Feature: domain Description: Intron_maturas2 Location: 41 9727-420054 bp Feature: domain Description: HNHc Note: nucleases Location: 420207-420357 bp Feature: domain Description: HNHc Note: nucleases Location: 420207-420357 bp Feature: gene Location: 421008-421325 bp Ori: QEW34889.1 Feature: domain Description: DUF4134 Location: 421053-421320 bp Feature: domain Description: DUF41 34 Location: 421 053-421 320 bp Feature: gene Location: 421527-422255 bp Feature: gene Location: 1420960-1422084 bp Ori: QEW35622.1 Feature: domain Description: ATPase_2 Location: 1421014-1421743 bp Feature: domain Description: ATPase_2 Location: 1 421 01 4-1 421 743 bp Feature: gene Location: 1422366-1422476 bp Feature: gene Location: 1422463-1423926 bp Ori: QEW35624.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1422919-1423450 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 42291 9-1 423450 bp Feature: gene Location: 1423923-1426100 bp Ori: QEW35625.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1424538-1424991 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 424538-1 424991 bp Feature: gene Location: 1427035-1427406 bp Feature: gene Location: 1427533-1429455 bp Ori: QEW35627.1 Feature: domain Description: Glyco_hydro_127 Location: 1427680-1429195 bp Feature: domain Description: Glyco_hydro_1 27 Location: 1 427680-1 4291 95 bp Feature: gene Location: 2102105-2104408 bp Ori: QEW36206.1 Gene: recD2_2 Feature: domain Description: DEXXQc_Upf1-like Location: 2102765-2102891 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 21 02765-21 02891 bp Feature: domain Description: DEXXQc_Upf1-like Location: 2103032-2103236 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 21 03032-21 03236 bp Feature: domain Description: KOG1805 Location: 2103515-2103830 bp Feature: domain Description: KOG1 805 Location: 21 0351 5-21 03830 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 2104004-2104385 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 21 04004-21 04385 bp Feature: gene Location: 2104412-2110006 bp Ori: QEW36207.1 Feature: domain Description: PRK00087 Location: 2104493-2104703 bp Feature: domain Description: PRK00087 Location: 21 04493-21 04703 bp Feature: domain Description: PRK00087 Location: 2104709-2105477 bp Feature: domain Description: PRK00087 Location: 21 04709-21 05477 bp Feature: gene Location: 2110019-2111635 bp Ori: QEW36208.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2110454-2110925 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21 1 0454-21 1 0925 bp Feature: gene Location: 2111651-2111881 bp Ori: QEW36209.1 Feature: domain Description: HTH_26 Location: 2111672-2111852 bp Feature: domain Description: HTH_26 Location: 21 1 1 672-21 1 1 852 bp Feature: gene Location: 2112089-2112448 bp Feature: gene Location: 4001303-4002316 bp Ori: QEW37860.1 Feature: domain Description: Bac_Flav_CT_J Location: 4001324-4002287 bp Feature: domain Description: Bac_Flav_CT_J Location: 4001 324-4002287 bp Feature: gene Location: 4002344-4002880 bp Feature: gene Location: 4002873-4004708 bp Ori: QEW37862.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003167-4003989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40031 67-4003989 bp Feature: domain Description: Intron_maturas2 Location: 4004148-4004517 bp Feature: domain Description: Intron_maturas2 Location: 40041 48-400451 7 bp Feature: domain Description: HNHc Note: nucleases Location: 4004541-4004682 bp Feature: domain Description: HNHc Note: nucleases Location: 4004541 -4004682 bp Feature: gene Location: 4005110-4005250 bp Feature: gene Location: 4005229-4005429 bp Ori: QEW37864.1 Feature: domain Description: DUF4141 Location: 4005235-4005370 bp Feature: domain Description: DUF41 41 Location: 4005235-4005370 bp Feature: gene Location: 4918353-4919981 bp Ori: QEW38630.1 Gene: helD_2 Feature: domain Description: UvrD Location: 4918380-4918497 bp Feature: domain Description: UvrD Location: 491 8380-491 8497 bp Feature: domain Description: UvrD Location: 4919172-4919667 bp Feature: domain Description: UvrD Location: 491 91 72-491 9667 bp Feature: domain Description: UvrD Location: 4919739-4919892 bp Feature: domain Description: UvrD Location: 491 9739-491 9892 bp Feature: gene Location: 4919991-4921760 bp Feature: gene Location: 4922089-4923549 bp Ori: QEW38632.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4922290-4922917 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4922290-492291 7 bp Feature: gene Location: 4923566-4924468 bp Feature: gene Location: 4924776-4925318 bp Sorry, your browser does not support 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Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, matK (CHL00002), HNHc (smart00507), DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), DUF4134 (pfam13572), ATPase_2 (pfam01637), RVT-UG3
RVT-UG8, Glyco_hydro_127 (pfam07944), DEXXQc_Upf1-like (cd17934), KOG1805 (KOG1805, DNA replication helicase ), PIN_VapC_PhoHL-ATPase (cd09883), PRK00087 (bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1), RVT-AbiP2, HTH_26 (pfam13443), DUF4141 (pfam13605), UvrD (COG0210)
RVT-Retrons