myRT

myRT report for GCA_008728415.1_ASM872841v1

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Seq: CP044259.1 Klebsiella pneumoniae strain KP65 plasmid pKPC-2-KP65, complete sequence (144422 bp)
Overview 1 RT 1: 32374-36171 bp 2 RT 2: 69097-73318 bp Neighborhood of RT #1 [32374, 36308] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [69097, 73318] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 32374-32520 bp Feature: domain Description: PRK10276 Location: 32422-32521 bp Feature: domain Description: PRK1 0276 Location: 32422-32521 bp Feature: gene Location: 32679-32930 bp Feature: gene Location: 32930-34414 bp Ori: QEW94593.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33332-34022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33332-34022 bp Feature: gene Location: 34663-35634 bp Ori: QEW94594.1 Feature: domain Description: StbA Location: 34666-35611 bp Feature: domain Description: StbA Location: 34666-3561 1 bp Feature: gene Location: 35637-36308 bp Ori: QEW94595.1 Feature: domain Description: Plasmid_stab_B Location: 35652-35859 bp Feature: domain Description: Plasmid_stab_B Location: 35652-35859 bp Feature: domain Description: Plasmid_stab_B Location: 35964-36171 bp Feature: domain Description: Plasmid_stab_B Location: 35964-361 71 bp Feature: gene Location: 69097-69519 bp Ori: QEW94641.1 Feature: domain Description: DUF1380 Location: 69100-69394 bp Feature: domain Description: DUF1 380 Location: 691 00-69394 bp Feature: gene Location: 69516-69707 bp Feature: gene Location: 70021-71688 bp Ori: QEW94643.1 Gene: ltrA Feature: domain Description: RVT_N Location: 70069-70306 bp Feature: domain Description: RVT_N Location: 70069-70306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70357-70999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70357-70999 bp Feature: domain Description: GIIM Note: maturase Location: 71050-71284 bp Feature: domain Description: GIIM Note: maturase Location: 71 050-71 284 bp Feature: domain Description: HNHc Note: nucleases Location: 71494-71653 bp Feature: domain Description: HNHc Note: nucleases Location: 71 494-71 653 bp Feature: gene Location: 72568-72825 bp Feature: gene Location: 73088-73318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), DUF1380 (pfam07128), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: CP044258.1 Klebsiella pneumoniae strain KP65 chromosome, complete genome (5438014 bp)
Overview 1 RT 1: 1222744-1227629 bp 2 RT 2: 1386786-1389562 bp 3 RT 3: 1837316-1842188 bp 4 RT 4: 1857929-1864191 bp 5 RT 5: 3089644-3093782 bp 6 RT 6: 3238599-3241430 bp 7 RT 7: 3310163-3314425 bp 8 RT 8: 3670277-3673715 bp Neighborhood of RT #1 [1222744, 1227634] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1386786, 1389562] RVT-GII Neighborhood of RT #3 [1837316, 1842202] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1857929, 1864191] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3089644, 3093782] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3238599, 3241441] PRK10276 RVT-GII DinI Neighborhood of RT #7 [3310163, 3314463] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3670277, 3673765] DinI RVT-GII int Feature: gene Location: 1222744-1225128 bp Ori: QEW90530.1 Feature: domain Description: Phage_GPA Location: 1223308-1224274 bp Feature: domain Description: Phage_GPA Location: 12 2 3308-12 2 42 74 bp Feature: gene Location: 1225358-1225609 bp Feature: gene Location: 1225609-1227093 bp Ori: QEW90532.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226011-1226701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 6011-12 2 6701 bp Feature: gene Location: 1227201-1227389 bp Feature: gene Location: 1227401-1227634 bp Ori: QEW90534.1 Feature: domain Description: DinI Location: 1227446-1227629 bp Feature: domain Description: DinI Location: 12 2 7446-12 2 762 9 bp Feature: gene Location: 1386786-1386989 bp Feature: gene Location: 1386982-1387320 bp Feature: gene Location: 1387417-1388901 bp Ori: QEW90693.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387819-1388509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387819-1388509 bp Feature: gene Location: 1388901-1389152 bp Feature: gene Location: 1389305-1389562 bp Feature: gene Location: 1837316-1838485 bp Ori: QEW91070.1 Gene: dacD Feature: domain Description: dacD Location: 1837325-1838480 bp Feature: domain Description: dacD Location: 183732 5-1838480 bp Feature: gene Location: 1838755-1839006 bp Feature: gene Location: 1839006-1840490 bp Ori: QEW91072.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839408-1840098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839408-1840098 bp Feature: gene Location: 1840572-1841045 bp Ori: QEW91073.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1840575-1841034 bp Feature: domain Description: PRK10016 Location: 1840575-1841034 bp Feature: gene Location: 1841144-1842202 bp Ori: QEW91074.1 Feature: domain Description: YccC Location: 1841150-1842188 bp Feature: domain Description: YccC Location: 1841150-1842 188 bp Feature: gene Location: 1857929-1859032 bp Ori: QEW91093.1 Feature: domain Description: STKc_PknB_like Location: 1858061-1858502 bp Feature: domain Description: STKc_PknB_like Location: 1858061-1858502 bp Feature: gene Location: 1859102-1859344 bp Feature: gene Location: 1859591-1860691 bp Ori: QEW91094.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1859774-1860302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1859774-1860302 bp Feature: gene Location: 1860806-1863052 bp Ori: QEW91095.1 Feature: domain Description: AAA_15 Location: 1860809-1861817 bp Feature: domain Description: AAA_15 Location: 1860809-1861817 bp Feature: gene Location: 1863961-1864191 bp Feature: gene Location: 3089644-3090909 bp Ori: QEW92222.1 Feature: domain Description: umuC Location: 3089647-3090907 bp Feature: domain Description: umuC Location: 3089647-3090907 bp Feature: gene Location: 3090911-3091330 bp Ori: QEW92223.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3090914-3091325 bp Feature: domain Description: PRK102 76 Location: 3090914-309132 5 bp Feature: gene Location: 3091410-3092894 bp Ori: QEW92224.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3091812-3092502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3091812 -3092 502 bp Feature: gene Location: 3092894-3093145 bp Feature: gene Location: 3093693-3093782 bp Feature: gene Location: 3238599-3239018 bp Ori: QEW92371.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3238602-3239013 bp Feature: domain Description: PRK102 76 Location: 32 38602 -32 39013 bp Feature: gene Location: 3238996-3239181 bp Feature: gene Location: 3239097-3240581 bp Ori: QEW92373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3239499-3240189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 39499-32 40189 bp Feature: gene Location: 3240581-3240832 bp Feature: gene Location: 3241199-3241441 bp Ori: QEW92375.1 Feature: domain Description: DinI Location: 3241250-3241430 bp Feature: domain Description: DinI Location: 32 412 50-32 41430 bp Feature: gene Location: 3310163-3310453 bp Feature: gene Location: 3310465-3310698 bp Ori: QEW92445.1 Feature: domain Description: PRK10597 Location: 3310468-3310693 bp Feature: domain Description: PRK10597 Location: 3310468-3310693 bp Feature: gene Location: 3310777-3312261 bp Ori: QEW92446.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3311179-3311869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3311179-3311869 bp Feature: gene Location: 3312261-3312512 bp Feature: gene Location: 3313102-3314463 bp Ori: QEW92448.1 Feature: domain Description: PRK05318 Location: 3313126-3314425 bp Feature: domain Description: PRK05318 Location: 331312 6-331442 5 bp Feature: gene Location: 3670277-3670510 bp Ori: QEW92780.1 Feature: domain Description: DinI Location: 3670319-3670505 bp Feature: domain Description: DinI Location: 3670319-3670505 bp Feature: gene Location: 3670521-3670709 bp Feature: gene Location: 3670810-3672294 bp Ori: QEW92781.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671212-3671902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36712 12 -3671902 bp Feature: gene Location: 3672294-3672545 bp Feature: gene Location: 3672713-3673765 bp Ori: QEW92783.1 Feature: domain Description: int Location: 3672716-3673715 bp Feature: domain Description: int Location: 3672 716-3673715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), int (PHA02601)